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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttatctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac...

Basic information

species Glycine max
transcript GLYMA02G13860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G137541_T01 (Zea mays), 5'ss of exon 4
GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaa--------aacttatctccctatttg--tccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctg--cttaagttcagtac-----------------------------------------------------------------------------
|||||||||||||| || ||||| || || ||||||||||| || ||||| || ||| |||| |||||||||   |  || |        ||  |||      |  ||  || | |||| |||   ||   | | |   ||   ||  |  | | |  ||  |||    | |   |||| |                                                                             
GTCACTGGCAAGGCGGTGATGCTTGACGAGATCATCAACTACGTTCAGTCCCTGCAAAGACAAGTTGAGgtaataacaaacatcccccccaatatatactgagacctgaatcaagttgtcatttgcaatagaggaagtagaacagc--tagacactgagaccctgaatatgaacacagttcctctttctacaaaaccctcgttacatacatacataccgatggcaggcacatcaaaacactgaacgaatctcttgcag

upper sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G68920.2 (Arabidopsis thaliana), 5'ss of exon 5
GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttatctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac
|| ||||| |||||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || |||||||||||          | ||  || | |   |    ||  |  |  ||   || |||||   |||     ||   ||||   || |||||||   |||   
GTGACTGGGAAGGCAGTTATGCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGgtatg----ccgtttcctaattctcaacgaggt-gctctttgtgtttgcttcttgtaatcaattctt-ttgctcatttctcttttgcttaaa--cag---

upper sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G26260.2 (Arabidopsis thaliana), 5'ss of exon 5
GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaactt----atctccctatttgtccacttgtgattcttaag---tcatgtaactgatttgcactgtatattttgatt-ctgcttaagttcagtac--
|| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||  | ||||| |   |       |||    |  | |||||||    | |     ||||| ||   |||| ||| |      | |  | | | ||  || || |||   | || | |  
GTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGgtttccctttgtttgctttgggaatttcctattttcttagtgtctgttcttgagacttcatttaattagcaacctcactttgtgttagttacttcttccatgcatttcag

upper sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g00740.t01 (Vitis vinifera), 5'ss of exon 5
GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttat-ctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac--
|||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||    ||  |  |||  || || |||   | ||  || |||| || | || |   | |||||  || |     |  ||  |   |   | |   ||  
GTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAGgtatggtattaaggatctatgttctctttttcctccctattggttctcaattgatctggtttatttgttctat---cctgcatcttaaatgtctccgaaacat

upper sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S68_190V6.1 (Physcomitrella patens), 5'ss of exon 3
-------------------------------GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaa---aaacttatctccctatttgtccacttgtg---attcttaagtcatgtaactgatttgcactg----tatattttgattctgc-ttaagtt---cagtac---------------------
                               ||||| ||||||||||| ||||| || || |||||||||||||| || || || |||||||| ||||| |||||  |   |   |   | | | | ||  |  | |  ||      ||   | || ||     ||  ||  | ||     |  ||| |  |   |  || ||||     ||||                     
CCTGCAGGACCTCGTACCCGGCTGCCGCAAAGTCACCGGCAAGGCAGTCATGCTTGACGAGATCATCAACTATGTTCAATCCCTCCAACGACAAGTTGAAgtatgtctcttacccattttcaacgcactgctaatgctattccattcatgtcttaggcacccttcttgttatcgctagtgatgaattgtagtctagtattgagttgtatcgtacactttgttatcttttttacag

upper sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
-------------------------------GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttatctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac----------------
                               ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| || || ||||||        |    || ||  ||  | | | |||   |||   |   |  | | | ||| | |      |||    | ||  || |||| |||   |                 
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctca----ttctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatg-ttaacttccacattttttttgtgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193469602|gb|FK435962.1|FK435962
EST:     TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG                         TTTTTGTCTATGAAACTTGCTACTGTAAATCCACGGCTGGATTTTAATATT
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATT
EST: gi|208266542|gb|GE062805.1|GE062805
EST:     TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG                         TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATT
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATT
EST: gi|208316755|gb|GE115383.1|GE115383
EST:     TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG                         TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGG
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttggcagTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGG