1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CATTGCCATGGGATGTATTTATACTGAGGCAAAGAACTATCCCCGTGAGCCAGCTGCGCATGTAGCTATAAgtgagtttttcccctcattttacagtttatatgttcattattgtgatgtttattctgaccaaataaattaaacaggttaactttgacaatctcatagcaa...
species | Glycine max |
transcript | GLYMA02G12670.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACTGAGGCAAAGAACTATCCCCGTGAGCCAGCTGCGCATGTAGCTATAA GAACTGTGCGGCGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTGEST: gi|207845703|gb|GD814558.1|GD814558
genomic: TACTGAGGCAAAGAACTATCCCCGTGAGCCAGCTGCGCATGTAGCTATAAgtgagttttt ... ttttattcagGAACTGTGCGGCGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTG
EST: CCCCGTGAGCCAGCTGCGCATGTAGCTATAA GAACTGTGCGGCGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTGEST: gi|12773472|gb|BG238399.1|BG238399
genomic: CCCCGTGAGCCAGCTGCGCATGTAGCTATAAgtgagttttt ... ttttattcagGAACTGTGCGGCGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTG
EST: TACTGAGGCAAAGAACTATCCCCGTGAGCCAGCTGCGCATGTAGCTATAA GAACTGTGCGGCGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTG
genomic: TACTGAGGCAAAGAACTATCCCCGTGAGCCAGCTGCGCATGTAGCTATAAgtgagttttt ... ttttattcagGAACTGTGCGGCGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGCCATGGGATGTATTTATACTGAGGCAAAGAACTATCCCCGTGAGCCAGCTGCGCATGTAGCTATAAgtgagtttttcccctcattttacagtttatatgttcattattgtgatgtttattctgaccaaataaattaaacaggttaactttgacaatctcatagcaa
- - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa