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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttggttttggtcttgaaattcagtattctgaattatatttacaggctaaaatactttgcaagatctttgcag

Basic information

species Glycine max
transcript GLYMA02G10790.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 6
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttggtt---ttggtcttgaaattcagtattctga-attatatttacaggctaaaatactttgcaagatc--tttgcag
||| || ||||| ||||| || ||||| |||||||| || ||||| ||  |||| |||| |||  | ||| |||||||||||||||||||||| || ||||||   |   | ||       | ||   |    || |||||    | | | | |     ||| ||  |||| |  |   | |||||
TGAGGCGGAAGTGCGGATAGCGGCTGCAGGGAAAGTTACTAAGTTCTGTAGGATTTTAAGTCCTCAGCTTGCAATTCAGCATATTCTTCCTTGTGTCAAGgtgggccaacgcttaaccaaatattattaactggttttctgctgctgtttattcccagcaaactaacttgccaactgcatctgcag

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 6
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttggttttggtcttgaaattcagtattctgaattatatttacaggctaaaatactttg---caag-atctttgcag
||| |||||||| ||||| ||||||||||| ||||| || ||||||||||| |||||||||||  | || ||| | || ||||||||||| ||||| ||||||        |   |  | |||||   || |    ||   | | | | | |  | || ||  |     ||||    | | |||
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaaagcaat--tattgaacaccatttcgttgctatttttcttctgagtgaattaactcatgccaagtgcatctacag

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttgg----ttttggtcttgaaatt--cagtattctgaattatatttacaggctaaaatactttgcaagatctttgcag
||| |||||||| || || || |||||||| ||||| || ||||| ||||| |||||||||||| | |||||||| || ||||||||||| ||||| ||||||  |     |    | || || |||    |     | |||||| | | ||| ||  | | |      |||||     |||  ||
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaaagcaattattcgttttgttgctattttttttctgagtga-attaactagttcatgctaattgca-----tttatag

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgt--gtctctttggttttggtcttga--aattcagtattctgaattatatttacaggctaaaatactttgcaagatctttgcag
||| |||||||| || || ||||| || || |||||||||||||| || ||| | || |||||||| ||| | |||||||| || |||||||| ||||||||  | ||| ||   ||   | |  |  | ||   |  | |    | | |    |   |   |||| |    |  |||  ||||
TGAGGCTGAAGTGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTGCGATTCAGCACATCCTTCCTTGTGTGAAGgtaagactccttaaattctatataaacgagttgtttgatgtcccctgtctcgtaatattctgatacatactgatgtctg-gcag

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 5
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttgg-----tt---ttggtcttgaaattcagtattctgaattatatttacaggc-taaaatactttgcaagatctttgcag-------------
||||||||||||||| || |||||||| || ||||| || |||||||| |||||  |||| || ||  || | || ||||| ||||| || || ||||||||   |  ||       ||   ||| | |  || |||  ||     ||| | |  || ||   |   ||| |    | |||   |                 
TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatca-acgtatagttgttgcatattactgatgattcctcttaatgctacctgtag

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 6
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttggttttggtcttgaaattcagtattctgaattatatttacaggctaaaatactttgcaagatctttgcag--------------
||| || ||||| ||||| ||||||||||| ||||| ||||||||||| || || ||||| || || ||  | || ||||| |||||||| || || |||||      ||       || |    |||   |||| || |    |   | |  ||       ||||| |    |    |               
TGAGGCAGAAGTTCGGATAGCAGCTGCTGGAAAAGTTACCAAGTTTTGTCGCATTTTAAACCCTGAACTCGCTATCCAGCACATTCTTCCCTGTGTAAAGgtacacacttaagaagagtgtgttgatttcatattatgcaaaggaccaaaatactgtcggtgtttgctaagcttacctataaatctacacgtag

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtg-tctctttggttttggtcttgaaattcagtattctgaattatat----ttacaggctaaaatactttgcaagatctttgcag----------------------------------------
||| ||||||||||| || ||||||||||| ||||| || || || || | ||| ||||||||||| ||| ||||||| ||||||||||| || || |||||| || | ||  ||       ||    || ||||| |  | | | |    ||     | ||  |||| |  |     | ||||                                         
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146818|gb|AW508740.1|AW508740
EST:     GGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAG                         GAATTGTCGACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTG
genomic: GGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctcttt ... atctttgcagGAATTGTCAACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTG