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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCCTGTTGAAAAGCTGTTAATCCATGACGTACCAGTGGATATCATTTGTACTCCAACACAGGTCATTTTCACAAATACATTTATGCCAAAGCCTCAAgtttggttaaacaatgctatctagtacctatctgacttcacattttcttattaccttttaatctgtaaatcattgagaag

Basic information

species Glycine max
transcript GLYMA02G08860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g07020.1 (Oryza sativa), 5'ss of exon 5
TATTCCTGTTGAAAAGCTGTTAATCCATGACGTACCAGTGGATATCATTTGTACTCCAACACAGGTCATTTTCACAAATACATTTATGCCAAAGCCTCAAgtttggttaaacaatgctatctagtacct-----atctgacttcacattttcttattaccttttaatctgtaaatcattgagaag--
 ||||| ||||| ||||||||| | ||||| |||||||| || || || || |||||||| |||||||| |||||||||||    ||  | || || |||| |  |    |   |  ||| || ||  |     | | | |   | |   |  | | |||   |  |  |  ||    ||       
-ATTCCAGTTGAGAAGCTGTTAGTTCATGATGTACCAGTTGACATTATCTGCACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatgattgtattatttaatattttggtaaaccggcaaaaaaaccttatgtgaccagatttttggggaacttctgcatgcag

upper sequence: GLYMA02G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 5
TATTCCTGTTGAAAAGCTGTTAATCCATGACGTACCAGTGGATATCATTTGTACTCCAACACAGGTCATTTTCACAAATACATTTATGCCAAAGCCTCAAgtttggttaaacaatgctatctagtacctatc-------tgacttcac--------attttcttattaccttttaatctgtaaatcattgagaag------
 ||||||||||| |||||||||||||||||||| ||||| ||||| || || || ||||| || |||||||| || || || |  || ||||||||||||| || || |  |||| ||   |  |   ||||       |||||            || |||  |  | | |     |  |    | |||| |        
-ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa