1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAGAGGAGCTCATCAAGGCAGTAGCAGATTCAGGTGCCAAAGTGATTGTCAGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAgtatgtgaagtctttatccatgtttggtggttttaattgtctcttactattgaattaatatgaacattataactgcacattagattgttttctaacttcaaaattcctgcttttag
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAA GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGEST: gi|151397877|gb|EV267750.1|EV267750
genomic: GGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAgtatgtgaag ... ctgcttttagGCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCG
EST: GGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAA GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGEST: gi|16997151|gb|BM086523.1|BM086523
genomic: GGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAgtatgtgaag ... ctgcttttagGCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCG
EST: AGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAA GCTTATGGTTCTGAAAATCAGCTCAEST: gi|254342218|gb|GR853355.1|GR853355
genomic: AGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAgtatgtgaag ... ctgcttttagGCTTATGGTTCTGAAAATCAGCTCA
EST: AGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAA GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCG
genomic: AGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAgtatgtgaag ... ctgcttttagGCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGGAGCTCATCAAGGCAGTAGCAGATTCAGGTGCCAAAGTGATTGTCAGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAgtatgtgaagtctttatccatgtttggtggttttaattgtctcttactattgaattaatatgaacattataactgcacattagattgttttctaacttcaaaattcctgcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA