Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGGAGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggcttgtatagcttgcactcttgccatttttcttttaaaaaataaacactatcaccgagtaattttaccctttgtattgtcctttcaaagagagtcttagagtttgataccatgcaaaatttatgaattggtattaattttctgtctttcgtatctttcattttattttacag

Basic information

species Glycine max
transcript GLYMA02G07830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g44900.2 (Oryza sativa), 5'ss of exon 5
ATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGGAGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggcttgtatagct-tgcactcttgccatttttcttttaaaaaataaacactatcaccgagtaattttaccctttgtattgtcctttcaaagagagtcttagagtttgataccatgcaaaatttatgaattggtattaattttctgtctttcgtatctttcattttattttacag
||  || |  || || || ||  | |||||||||||  | ||||| ||| | ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| ||||  || |  | |  || || | || |  |   |  ||     |||  |   ||      | |   | | || |  | |||    |    | | |  | |                                                                   
ATTGGAGTCAATATTAAGACTTTTGGATAATGATGAGTTGAGTCCTGAGCAAGTTAATGATGTGAAAGATTTCCTGGATGACTATGTTGAACGTAACCAGgtgtggct-gtattcctatttatttgtgtcaatattttcatccgatttagtt--tattgctatgttcgcagaacacat-tcttattatgtcagtacgttattcaaatctag-------------------------------------------------------------------

upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 6
lower sequence: AC197122.3_FGT003 (Zea mays), 5'ss of exon 7
ATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGGAGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggct-----tgta--tagcttgcactcttgccatttttcttttaa--------aaaataaacactatcaccgagtaattttaccctttgtattgtcctttcaaagagagtcttagagtttgataccatgcaaaatttatgaattggtattaattttctgtctttcgtatctttcattttattttacag
||  || |  |||||| ||||  | |||||||||||  | ||||| ||| | || |||||||| || ||||| || ||||||||||| || ||||||||||| || ||      |||  |  ||    ||||  ||||  |   ||  |        ||||| |   |||     ||              | |  | |  ||  |  |          | | ||||| ||| ||     |||||       || ||||  | | |||||| |  ||||||    ||||   
ATTGGAGTCAATCTTGCGGCTTTTGGATAATGATGAGTTGAGTCCTGAGCAAGTCAATGATGTTAAAGATTTTCTTGATGACTATGTTGAACGTAATCAGgtatgtctgccttcgtagttgactcatgctctctccatcctgaattataggttatccaaaatgacatctaatttggaacggggagggataatatcctttttttgtattgttgactgctaattgtgataacatacagg-catatgatcgaccttttatttgttat-tttcgttttcttcattcatatttag--

upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGGAGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggcttgtatagcttgcactcttgccatttttcttttaaaaaataaacactat-caccgagtaattttaccc-tttgtattgtcctttcaaagagagtcttagagtttgataccatgcaaaatttatgaattggtattaattttctgtctttcgtatctttcattttattttacag
 |  ||| | ||||||||||| || || ||||||||| ||||||||||  | || ||||| ||||| ||||| |||||||| ||||| || || |||||||| ||   | | ||      | || ||  || |||   |||     || || ||      |||  | |   |  |  || |||| || | |   |  | || |   |  ||  | | ||| |                                                         
GTTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAGTCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGgtctgctatatcta------aatcctggaatattttgcttatgtgttataccctgggtttcgaacattaaaatacacttatattatcttgt---actgtgttt---aactttcttctatgtag--------------------------------------------------------

upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 6
ATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGGAGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggcttgtatagcttgcactcttgccatttttcttttaaaaaataaacactatcaccgagtaattttaccctttgtatt-gtcctttcaaagagagtcttagagtttgataccatgcaaaatttatgaattggtattaattttctgtctttcgtatctttcattttattttacag
 |  ||| | || ||||||||||| |||||||||||| | ||||| ||| |||| |||||||| || || ||| ||||||| ||||| || |||||||||||||   |||       |  | | |||   | ||| ||||     | | |  ||  |||      ||   ||   |  ||   || | | ||   |  | |                                                                             
GTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGGTCAATGATGTAAAAGACTTCTTGGATGATTATGTGGAACGTAATCAGgtttaagttgctcgaactttaattttgtt-tctttattttccttgacatagcctgccacttttagatgcaacatatattaagagtacatgcatgcattgcc-----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208190462|gb|GD993658.1|GD993658
EST:     AGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAG                         GAGGACTTTGAAGAATTTAGTGATGTTGATGAGCTATATAGTTCATTACCC
genomic: AGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggcttg ... tattttacagGAGGACTTTGAAGAATTTAGTGATGTTGATGAGCTATATAGTTCATTACCC
EST: gi|208273958|gb|GE071454.1|GE071454
EST:     AGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAG                         GAGGACTTTGAAGAATTTAGTGATGTTGATGAGCTATATAGTTCATTACCC
genomic: AGGTTAATGATGTCAAGGATTTCCTGGATGACTATGTAGACCGTAATCAGgtttggcttg ... tattttacagGAGGACTTTGAAGAATTTAGTGATGTTGATGAGCTATATAGTTCATTACCC