Sequence
atgc intronic sequence ATGC exonic sequenceTTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgcttacagatttataatcaatttattgtgcttgactttgatcaatggtttcaataaattttgatgtgcattacaaat...
Basic information
species | Glycine max |
transcript | GLYMA02G06720.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g42820.2 (Oryza sativa), 5'ss of exon 8
TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgcttacagattta-taatcaatttattgtgcttgactttgatcaatggtttcaataaattttgatgtgcattacaaat
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TTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTgtaagaatt--catgttggatgagcatgagaatttagtaatagctactttttaactttatctgttgagttgtgctaatgacatttgatgatcag-------
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g40490.1 (Oryza sativa), 5'ss of exon 8
TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgcttacag-atttataatcaatttattgtgcttgactttgatcaa-tggtttcaataaattttgatgtgcattacaaat--
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TTTGCTATGCATGAAGATCAGCCATACCACAAATCATGCTACAAAGATTTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTgtaagt----gaatgaattccatgctcagaatgtgcatggacgtgttagttggagttacattcctgatctgtcttgaattgagactgttgcatttcatacacag
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 7
TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgct-tacagatttataatcaatttattgt-gcttgactttgatcaatggt-ttcaata-aattttgatgtgcattacaaat
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TTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTTgtaagtgtcaatcctaaggccggacaacataactttatattctgcaaaagctagttctatttatctcatctatatccagtatgactatggaaagtattct----
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 10
TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgct-tacagatttataatc------aatttattgtgcttgactttgatcaatggtttcaataaattt-tgatgtgcattacaaat
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TTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtcaatccaaaggcgggacaatataactttatattctgcaaaagctagttctattta--tttgatctatatccagtatgaatatgtgaagtattct------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15288302|gb|BI472193.1|BI472193EST: CCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTT ATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGG
genomic: CCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtacta ... ttcattgcagATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgcttacagatttataatcaatttattgtgcttgactttgatcaatggtttcaataaattttgatgtgcattacaaat
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC