Sequence
atgc intronic sequence ATGC exonic sequenceATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg...
Basic information
species | Glycine max |
transcript | GLYMA02G05800.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G36280.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg--------------
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ATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgttt-tacttagttaatatgatcttgagctcgtttctagtcgggtggtcttgctgtcttggtttccg-acaggt-ggtctctaaccagagcttcccttttgtgtttag
upper sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G36290.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg
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ATAATGGTGGTGGGATGGATCCTAATGGGATCAGAAAATGCATGAGCTTAGGCTACTCGTCAAAGAAGTCTAATACGACAATTGGACAATgtaattgt-tatattttgttgatcggacatc---aatcttctttctagtttgctacaaaaggcag-gtctgtaactatagttccacctttgtgtgtag--
upper sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G36270.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg-------------------
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ATGATGGCGGTGGAATGGATCCCGATGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACGACGATTGGACAGTgtaattg------ttttacttagttattatgatattgagctcatttctagttgagttggtcttgctgtcttggtctccaacaggcggtctctaaccagagtttcaccttttgtgttcag
upper sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02740.t01 (Vitis vinifera), 5'ss of exon 5
ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatct-----gaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg--
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ATGATGGAGGTGGAATGGATCCTGAATCTATTCGGAAATGCATGAGCTTGGGTTACTCTTCAAAGAAGTCGAACACAACAATTGGACAATgtaattaccatgagtttcttttgt-catttactgttccttgtttgatgacaatcattttgg-ataatta-tacttgcttctacatt----tctattcaaattgtggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207690115|gb|GD671500.1|GD671500EST: CATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGT ATGGCAACGGTTTCAAAACTAGTACCATGAGGTTGGGTGCTGATGTTATTG
genomic: CATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaat ... tttattctagATGGCAATGGTTTCAAAACTAGTACCATGAGATTGGGTGCTGATGTTATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg
- - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT