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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAGGCAGATAGGGGAGACTGCTCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtacttatgttcctatttttttaattttatctaaaggaagagaatcttacagcgcctcattgctaacgattcctaaataatgcgattcttctttcag

Basic information

species Glycine max
transcript GLYMA02G05650.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g35890.1 (Oryza sativa), 5'ss of exon 7
CTCAAAGGCAGATAGGGGAGACTGCTCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtacttatgttcctatttttttaattttatctaaaggaagagaatcttacagcgcctcattgctaacgattcctaaataatgcgattcttctttcag
||||||| ||||| ||||| |||||| |||||||||  ||||||||||||||||| || |||||  ||||  || || || |||     ||| ||  |     | || ||| | ||   |      |     | || ||| |||    |||  |  |   |  ||
CTCAAAGACAGATTGGGGAAACTGCTATGAATGAAGCAAGCTCCAGATCTCATCAAATACTCAGGATGgt--ttgtgctcatatcaagctaaattgttt----gcaacagactttttttgtaaaaaaaaa--accggttcttaacc--tgctttgttaactgtag

upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G66310.1 (Arabidopsis thaliana), 5'ss of exon 8
CTCAAAGGCAGATAGGGGAGACTGCTCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtact-tatgttcctatttttttaattttatctaaaggaagagaatcttacagcgcctcattgctaacgattcctaaataatgcgattcttctttcag
| |||||||| || || ||||| ||||| |||||||| |||||| | |||||||||||| | ||| |||||    || ||  |  ||| |  || |  |  ||     |      | |    |  | |   || |    |    | |  | |    |||||| |||
CACAAAGGCAAATTGGTGAGACAGCTCTAAATGAAGTTAGCTCCCGGTCTCATCAGATTTTGAGATTGgtaaggcatcttgttgatttctatatatggttcaacact-gccttcttcatcatgttttaaaacttatatctttgcactcttac----cttcttacag

upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 6
CTCAAAGGCAGATAGGGGAGACTGCTCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtac--ttatgttcctatttttttaattttatctaaaggaagagaatcttacagcgcctcattgctaacgattcctaaataatgcgattcttctttcag
| || || || ||||||||||| || || ||||||   ||||| ||||||||||| |||||||||||||||    ||||  | |  ||  || |  | | || ||             | | | |||| |   |||   |   |   ||  |               
CCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTGgtatgactatgaccttcattgattgacat-agctgaatttcagatgcaagatatctcctcttacttaattgtagttttctacag---------------