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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGAATTTGACTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGgtatgaataacattttgtctgcataagagagtttaacttcagtcaaaatgaggtcataatcatcacaagtttctgatgtatctagtttatttgttgcag

Basic information

species Glycine max
transcript GLYMA02G05220.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g03680.t01 (Vitis vinifera), 5'ss of exon 6
GATGCAGAATTTGACTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGgtatga--ataacatt--ttgtctgca------taagagagtt-------taacttcagtcaaaatgaggtcat-----------aatcatcacaagt-ttctgatgtatctagtttatttgttgcag-----------------------
||||| |||||||||||||| || ||||||||||| || || |||||||| |||||||||||||||||||||||||| ||||||||| |||| || || |||||||  |||| |||  |||| || |       |  | |  |       ||| |       || |||||| |            ||| ||||   || |||| || | | |  |||||||||   |                        
GATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACAATGTGGAGACTGTTCTAGATCTCTCAGgtatgacaataatattcattgtttgaagccctccaccacaactctaataataaatctgaaagaactgaggtaaccagttgaataaaatgatcatttgtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtag