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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatatatattttttcttattagtaccttagttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccag

Basic information

species Glycine max
transcript GLYMA02G04320.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120490920|gb|EH219087.1|EH219087
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACA-TTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|20497810|gb|BQ272740.1|BQ272740
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAACAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|17518503|gb|BM187545.1|BM187545
EST:     TCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: TCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|13125648|gb|BG316218.1|BG316218
EST:     GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|11412198|gb|BF424209.1|BF424209
EST:     AAGGAGTGATGCAAATATTAAATACTATCATCANGGGTCAAGACGATTGA                         ATTTGGGTGCAAGTCCCACA
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACA
EST: gi|209697330|gb|BW655571.1|BW655571
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCAC
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCAC
EST: gi|14999822|gb|BI320636.1|BI320636
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|213615316|gb|DB963510.1|DB963510
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGGTCCAGTCCCACAATACCCACTCTACTCAGC
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGC
EST: gi|209714239|gb|BW665539.1|BW665539
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGC
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGC
EST: gi|193383290|gb|FK348643.1|FK348643
EST:     ATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: ATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|120530295|gb|EH258429.1|EH258429
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|213607636|gb|DB958655.1|DB958655
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATT
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTT-GGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATT
EST: gi|37996526|gb|CF808115.1|CF808115
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|13562529|gb|BG550749.1|BG550749
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|120495797|gb|EH223964.1|EH223964
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|20448749|gb|BQ252873.1|BQ252873
EST:     GTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|192313436|gb|FK005516.1|FK005516
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|6134078|gb|AW132407.1|AW132407
EST:     AGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGAATGGN                         ATTTGGGT-CCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCT
genomic: AGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGA-TGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCT
EST: gi|213591868|gb|DB973419.1|DB973419
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|6566266|gb|AW233945.1|AW233945
EST:     GTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|209723920|gb|BW675240.1|BW675240
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         G
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccag-
EST: gi|209723920|gb|BW675240.1|BW675240
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         G
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccag-
EST: gi|120531769|gb|EH259902.1|EH259902
EST:     AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: gi|22522287|gb|BU081107.1|BU081107
EST:     AGGGGGTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG                         ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatatatattttttcttattagtaccttagttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccag

- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGAT