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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaatatatatatcaagttatcaaaacactactagatgggcttctacaatcaactttattaacagttaacatttaaattgtcattttcctttattatatgcatttatttatttatttatgtttcttttgtgttag

Basic information

species Glycine max
transcript GLYMA02G04120.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701247|gb|BW652225.1|BW652225
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|18735196|gb|BM528624.1|BM528624
EST:     CAAGGGAGAAATTGAGGAGTTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|6134722|gb|AW133115.1|AW133115
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|213601137|gb|DB956473.1|DB956473
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTT
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTT
EST: gi|192306307|gb|FG995101.1|FG995101
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|151410816|gb|EV280631.1|EV280631
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|6566595|gb|AW234236.1|AW234236
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|16346050|gb|BI971645.1|BI971645
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
EST: gi|208274595|gb|GE070229.1|GE070229
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTC
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTC
EST: gi|193592646|gb|FK547040.1|FK547040
EST:     CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG                         ACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA
genomic: CAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaa ... tttgtgttagACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAGgtatacaaaatatatatatcaagttatcaaaacactactagatgggcttctacaatcaactttattaacagttaacatttaaattgtcattttcctttattatatgcatttatttatttatttatgtttcttttgtgttag

- - - GGAGAA