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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGATTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatgtttcctaaatgcttaatgtttgcagggtcaatataagtcaagctttaagtgcactaacagaaaagttatttattatttgtttatataaag...

Basic information

species Glycine max
transcript GLYMA02G03990.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03990.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G70410.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCAGATTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatgtttcctaaatgcttaatgtttgcagggtcaatataagtcaagctttaagtgcactaacagaaaagttatttattatttgtttatataaag
||| |||||  |||||||||||||||| ||  || |||||||||| |||||||| ||| | ||| ||||||| ||||| |||||||| || | |||| ||||| | ||     || |     || |   |||         |    |||     | || |  |||||||  |||||  |||  |  |  |||||      
CTCTGATTCTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcatta-----ccaagccatttcactcttg---------ttcttgtctgagatcaaata-actaacaccaaagtggttt--tgataatttatcag---

upper sequence: GLYMA02G03990.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0127g00720.t01 (Vitis vinifera), 5'ss of exon 5
CTCAGATTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatgtttcctaaatgcttaatgtttgcagggtcaatataagtcaagctttaagtgcactaacagaaaagttatttattatttgtttatataaag-----
|||||| ||  ||||||| || || ||||| |||||||| || || || ||||| |||||||||||||||||||| ||||||||||| ||||||||  ||||     |     ||      || ||| |||      ||  | |  ||      |  ||  |    | |  |||||| | ||||||   |  | |  |       
CTCAGACTCTCGAGTTTGCCCTTCACATATCCTGGATTTTCAGCCAGGGGAGGCATTTATGGTCCGAAACATTGCGAACATGGTTCCGCCATATGATCAGgtcctaaaaaacccc-----actcaatatttttttactctgtttttgtattttgtacaggtcttggaaatgaaagttctctattataattgcacagcatttcaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298175511|gb|HO018222.1|HO018222
EST:     AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: gi|298195403|gb|HO039234.1|HO039234
EST:     AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGCAGGGGCTGCCATAAAATATGCAGTGTTGCATTTA
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: gi|20449478|gb|BQ253602.1|BQ253602
EST:     AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGCAGGGGCT
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCT
EST: gi|23064138|gb|BU578911.1|BU578911
EST:     AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: gi|13480785|gb|BG510128.1|BG510128
EST:     AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGC
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGC
EST: gi|20813541|gb|BQ298019.1|BQ298019
EST:     AGGCCTTTATGGGCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
EST: gi|20813542|gb|BQ298020.1|BQ298020
EST:     AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAG                         ACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA
genomic: AGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatg ... gttattgtagACGAAGTATTCAGGAGCAGGGGCTGCCATAGAATATGCAGTGTTGCATTTA