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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaagcttccttagtgcttataaccaacctctgatcgttataattgccttttcttatgtttctatgttgtaatctgcag

Basic information

species Glycine max
transcript GLYMA02G03160.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaag--ccaagcttcct-tagtgcttataaccaacctctgatcgttataattgccttttcttatgtttctatgttgt-aatctgcag--------------------------------------------------------------
||| ||||| |||||||||||||||||||||||| ||||||| || | |||||||||||||   ||| || |    || ||||| || || || ||||| |||||  || | || | | |     ||  |   || | |||     |  ||     |||   |   ||||  ||   | | ||| |                                                                
TGGTAAATCTACAACATGTGTTGCCTTTATTCTTGCAATGTACAAGGAGGCTGGAATATTCACGCCTTTTGCAGAGTCGATTCAGGTGACCGAGTTCACTgtaagtacctaactacttgtccaagttgcaggaaaacactgtgttcttcaac-atgtttgaattcatttcgttgccatcattcttccattggttgatgccaaaagttccgaaattccctacaccaatctgactgtctacttctgcctcag

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G031824_T01 (Zea mays), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaagcttccttagtgcttataaccaacctctgatcgttataattgccttttctta-tgtttctatgttgtaatctgcag---------------------------
||| |||||||| || ||||| ||||| |||||| ||||||| || | |||||||||||||  |||| | ||    || || || || || || ||||| |||||  |    || |   |  |  |  | | |   | ||| || |  ||| | |   ||| |   |||| ||   |   ||                              
TGGTAAATCAACTACTTGTGTCGCCTTCATTCTTGCAATGTACAAGGAGGCTGGAATATTCACCCCTTTCTCGGAGTCGATCCAGGTCACCGAGTTCACTgtaagtgacatctcatgcttagtc-tctctatctcttcatccttctgtttgacgtgcattactaagtcta-gtcaaaccttgtgtcatttgattctgcttcttctgcctcag

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaagcttccttagtgcttataaccaacctctgatcgttataattgccttttcttatgtttctatgttgtaatctgcag
 || ||||| |||||||||||||| || || ||| ||||||| ||||| ||||| ||||||| |||| |  ||     ||||||||| ||||||||||| || ||      ||  ||  |  | |  | |||  |||   | |||  ||| |   |     | | |||   ||   || | |||
CGGTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttctttttttttcttttcaatatcaaa-tctttccattaacattactcatgaacgtttatcttctttcgtattttcag

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagc-caagcttccttagtgcttata-----accaacctctgatcgttataattgccttttcttatgtttctatgttgtaatctgcag
||||||||| |||||||||||||||||||| ||   ||||||||||| ||| ||||| || || ||   ||||||||| |||||||||||||| ||||| |||||    | || ||||  ||  ||        |     ||   || ||| ||||||    | | |  |  || |  |        |||
TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaattgc----tgtaacatggctttactactgctcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9900785|gb|BE609753.1|BE609753
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|10253715|gb|BE821481.1|BE821481
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|192309026|gb|FK001802.1|FK001802
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|7030112|gb|AW459895.1|AW459895
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|192309025|gb|FK001801.1|FK001801
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|298187517|gb|HO034666.1|HO034666
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGCGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|13252536|gb|BG363439.1|BG363439
EST:     CTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
EST: gi|6912952|gb|AW394540.1|AW394540
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... taatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA