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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttgacagagtatttactagctgaaatataaatcttaaacgcctgtttttctttttgtcagtcgtttgttttcctcagtctgattggacagcagc...

Basic information

species Glycine max
transcript GLYMA02G02600.6
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-----------------------------------
 || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                     
AAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttagacag

upper sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
------GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-------------------------------
       || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                 
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

upper sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.2 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-------------------------------
 || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                 
AAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283320|gb|AW595928.1|AW595928
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|208328923|gb|GE130935.1|GE130935
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|20813714|gb|BQ298192.1|BQ298192
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|120529071|gb|EH257205.1|EH257205
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT