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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttgacagagtatttactagctgaaatataaatcttaaacgcctgtttttctttttgtcagtcgtttgttttcctcagtctgattggacagcagc...

Basic information

species Glycine max
transcript GLYMA02G02600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-----------------------------------
 || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                     
AAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttagacag

upper sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
------GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-------------------------------
       || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                 
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

upper sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.2 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-------------------------------
 || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                 
AAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31459894|gb|CD401922.1|CD401922
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|15287962|gb|BI471853.1|BI471853
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|10236299|gb|BE805187.1|BE805187
EST:     CATTTTGGAATTCTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTATGTGGGAGT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGT
EST: gi|254346945|gb|GR856667.1|GR856667
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|17022553|gb|BM093587.1|BM093587
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|27427037|gb|CA938557.1|CA938557
EST:     CATTTTGGAATTTTCTTCTTATTTTATTCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|15203212|gb|BI425980.1|BI425980
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|6913295|gb|AW394825.1|AW394825
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|208328923|gb|GE130935.1|GE130935
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
EST: gi|13787813|gb|BG650405.1|BG650405
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatgttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGAT