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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctgttttgtatttttgctataatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttcctttatctgcag

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 6
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctgttttgtatttttgctataatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttcctttatctgcag
 | ||||| || ||||| ||  | || |||||||| || ||||| |||||||| || || ||||||||||| ||||| || ||||| || |||||||| ||| | ||  || |      ||| || ||| || | | ||  |||           ||| | ||| ||  | |||| | |         | || | |  ||| |||    || | |||||
ACTATTGAGTTTAAAGACATAATTAAAATTGGACGTACACATACCCAAGATGCCACCCCATTGACTCTTGGCCAAGAATTCAGTGGCTACACTACACAGgtaggatttattctagc-atcttttgttgtcttatttattaactac----------gcagt-taagat--taacaggtag---------acttatta--actatttaagattctatgcag

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 5
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctgttttgtatttttgctataatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttcctttatctgcag
||  | || || |||||||| || || || ||| | ||||||||||||||||| |||||||||||  | |||||||| ||| |||| ||| |||| |||||||  |              |||| ||||||| |||  ||  |||||   | |        | |||     |  ||   |  |   | | || | | |  ||   |    |   || ||
TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGATGCTACACCTTTGACATTAGGACAAGAATTTGGTGGCTATGCTACTCAAgtaaatt------------atttgttctgttttctatcctta-tataacaaaag--------tgaaaattacat-gtcattaagaaataacttataaatttttggatttcatgattgtag

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 5'ss of exon 7
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctgttttgtatttttgctataatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttcctttatctgcag
||  | || |||||||||||||| || |||||| | ||||| ||||||||||| ||||||||||| || |||||||| ||| |||| ||| |||| ||||||||  || || ||||  |       |||||     | |  | |   || |     |||   | ||||  ||     | ||  |                                   
TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATGCTACACCTTTGACACTAGGACAAGAATTTGGTGGCTATGCTACTCAAgtaag--tggttttgttcagaaaactgtgtttg----tctaacaaagttgaaaatcacat---acaatctggaactcacctgcag-----------------------------------

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctg-ttttgtatttttgctat--aatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttcctttatctgcag
|| ||||| |||||||||||| | || ||||| || ||||| |||||||||||||| ||||||||| | || ||||||||||||||||||  |||||||||||| ||  |  ||||   ||| |   | ||||||  |||| || |  | |||||  ||  |||    || |||  ||         ||  |||| | | | | ||| |             
TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaag-ttattcttgttacacttctaaaggttttgttgttttactgtcaagtggat-ttgttttggttgatactgcaagcc-------tgaaatttgttagtgcctttgttgcag--------

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S49_154V6.1 (Physcomitrella patens), 5'ss of exon 6
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctgttttgtatttttgct-ataatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttc-ctttatctgcag---
  || ||| || |  || ||||| |||||||| ||||||||||||||||||||    ||  | || || ||||||| ||||||||  ||    ||||| ||    |    | || |    | ||  | ||||  ||||||  | |   |    | |  ||| ||      |     ||  |        | ||   |   || |     | | || ||  |   
CAAAATGATTTTAGCGACATTGTTAAGATTGGTCGCACTCATACTCAAGATGCTGTTCCACTCACCCTCGGACAAGTGTTTAGTGCATACTGCACACAGgtttaatcaaatctgctca--tcgttttcttttacattttttttcaggttacgggatttatt-tatttatttatttatttatttaaaaaaaattggaacagctctgacggcatcatgtgatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279870|gb|BI943659.1|BI943659
EST:     ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAA                         GTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATCAG
genomic: ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgc ... ttatctgcagGTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATCAG
EST: gi|192322683|gb|FK015020.1|FK015020
EST:     ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAA                         GTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATCAG
genomic: ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgc ... ttatctgcagGTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATCAG
EST: gi|209717303|gb|BW659018.1|BW659018
EST:     ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAA                         GTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATC
genomic: ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgc ... ttatctgcagGTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATC