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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatatctttgaggatttcttgttatcactttaaggtcggggttgttaatttttgtaaaaccaataatgtgaaacctgactatgctctttttttccttcag

Basic information

species Glycine max
transcript GLYMA02G01750.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208334619|gb|GE130464.1|GE130464
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208044733|gb|GD841101.1|GD841101
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193333978|gb|FK301366.1|FK301366
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|254328074|gb|GR835039.1|GR835039
EST:     GCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|57575003|gb|CX547978.1|CX547978
EST:     AAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: AAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|192333634|gb|FK026879.1|FK026879
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|58016979|gb|CX703721.1|CX703721
EST:     GTGTGGACATTGCAAAAGTCTTGCTCNT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208245788|gb|GE050596.1|GE050596
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAACATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|208340776|gb|GE133712.1|GE133712
EST:     GTTGTTGGACATTGACAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: G-TG-TGGACATTG-CAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|163921267|gb|EH038909.1|EH038909
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|207684797|gb|GD664728.1|GD664728
EST:     TGGTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: TGGTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193330432|gb|FK295308.1|FK295308
EST:     TGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: TGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193679432|gb|FK621042.1|FK621042
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193720823|gb|FK658987.1|FK658987
EST:     GTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: gi|193304672|gb|FK272157.1|FK272157
EST:     CACCCTGGTGTGGACATTGCAAAAGTCTTGCTCCT                         ACTTACGAGAAAGTTGCCACAG
genomic: CACCCTGGTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAG