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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttttattctttctctgggcaatattaccttaatgctgacaagttaccaccagtagaaagctaaaagttttatcctaacttgatcttgattctt...

Basic information

species Glycine max
transcript GLYMA02G01510.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01510.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G121456_T02 (Zea mays), 5'ss of exon 4
---------------------------GAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttttattctttct-ctgggcaatattaccttaatgctgacaagttaccaccagtagaaagctaaaagttttatcctaacttga-tcttgattctt-
                           ||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||| ||||| |||| || |||||  ||    |    |||| |||  | ||  |   || || | |     || |      ||| |   |||   |  | |   |  || | ||| | ||  | 
TACTAATGCATTTTCGTTTTCTGTTAGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgta--ctgaacacaaattctgctgaacgatcatcaattgattcagttct-ttgcatgttataggatcttaatgttcatgtttgactttcagtctgggtttatt

upper sequence: GLYMA02G01510.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G121456_T03 (Zea mays), 5'ss of exon 6
GAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttttattctttct-ctgggcaatattaccttaatgctgacaagttaccaccagtagaaagctaaaagttttatcctaactt-gatcttgattctt-
||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||| ||||| |||| || |||||  ||    |    |||| |||  | ||  |   || || | |     || |      ||| |   |||   |  | |   |  ||   ||| | ||  | 
GAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgta--ctgaacacaaattctgctgaacgatcatcaattgattcagttct-ttgcatgttataggatcttaatgttcatgtttgactttcagtctgggtttatt

upper sequence: GLYMA02G01510.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G02560.1 (Arabidopsis thaliana), 5'ss of exon 6
GAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttttattctttctctgggca-atattaccttaatgctgacaagttaccaccagtagaaagctaaaagttttatcctaacttgatcttgattctt-
| ||||| ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||  |||| |||||||||   ||| |   |   |     |  ||  |  ||| ||  |   | ||| |     ||| |  | |||    | | | | |  | | |     ||||| 
GCATGGCTATATTCGATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGgtaaaactttcaccatcctttcactctcattatctcttgattttcttaggttcct--tggtaaattgataatttctcttttcaatgtggttaactgttcttg

upper sequence: GLYMA02G01510.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 5'ss of exon 6
GAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaac----ctttttattctttctctgggcaatattaccttaatgctgacaagttaccac-cagtagaaagctaaaagtt--ttatcctaacttgatcttgattctt
| ||||| ||||| || |||||||||||||||||||||||||| || ||||| ||||||||| |||| || ||||||     |  |        | | ||     |  ||    | |  || | | | |   | || | |||   |  | |||  | | | | | ||  | | |      
GCATGGCTATATTCGACACAATGAGGCATATCCGACCTGATGTTTCCACTGTGTGTGTTGGACTAGCAGCCAGgtaaagatgcactgagacagatttttgtagttttctatgccattcatggctaataattgctcaatggaacagtccatgttagtaaacttcattt--tttggg-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193464771|gb|FK430095.1|FK430095
EST:     AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAG                         TATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
genomic: AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttt ... taatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
EST: gi|15204414|gb|BI427182.1|BI427182
EST:     AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAG                         TATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG
genomic: AGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGgtaacctttt ... taatctgcagTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAG