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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAAAGATGTTTGGGTGATGAATGTAGTACCTCGTGATGGGCCAAACACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaacctgttttcctgaagcataaatttattgcatctttgatatctttctatgcatttgactcacttcacctttttagtctcatttgatgatatc...

Basic information

species Glycine max
transcript GLYMA02G00550.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00550.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0049g01180.t01 (Vitis vinifera), 5'ss of exon 7
AAGGAAAAGATGTTTGGGTGATGAATGTAGTACCTCGTGATGGGCCAAACACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtat---taaaacctgttttcctgaagcataaatttattgcatctttgatatctttctatgcatttgactcacttcacctttttagtctcatttgatgatatc
| || || |||||||||||||||||||| || |||   ||||| || ||||||||||| ||  | ||||||||||| || |||||  |||||||| ||||||||   || |   ||   |  |      ||  ||  ||||| | ||    |||    ||   |||||      |   |     |      ||||   |    
AGGGCAAGGATGTTTGGGTGATGAATGTTGTCCCTGAAGATGGACCTAACACACTTAAACTGATCTATGACAGAGGTCTAATAGGCACTATCCATAACTGgtatgcatatattttgaagttattttatgtattttatttgcaaccttagggtctggtaatatttttgaaaacagttgtcaaaaaaacagtttttgggaac---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237545|gb|BE806433.1|BE806433
EST:     ACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTG                         GTGTGAAGCATATTCAACATACCCCCGGACTTACGATTTACTCCATGCATG
genomic: ACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaac ... cttttaacagGTGTGAAGCATATTCAACATACCCCCGGACTTACGATTTACTCCATGCATG
EST: gi|20811343|gb|BQ295821.1|BQ295821
EST:     ACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTG                         GTGTGAAGCATATTCAACATACCCCCGGACTTACGATTTACTCCATGCATG
genomic: ACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaac ... cttttaacagGTGTGAAGCATATTCAACATACCCCCGGACTTACGATTTACTCCATGCATG