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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgtttgttactttttttttatctgtgttctcttagttgcattacctgaaattaaggttatctctacgactggatatcacataggagccaaacaca...

Basic information

species Glycine max
transcript GLYMA01G43910.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43910.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g42940.3 (Oryza sativa), 5'ss of exon 4
----------------------------------ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgt---gtttgttactttttttttatctg-----tgttctcttagttgca-ttacctgaa----attaaggttatctctacgactggatatcacataggagccaaacaca
                                   | || || |||||||| |||||||| ||||||||  | ||||||||||| ||||| || ||| |||||||      ||||  |||||| ||| ||       |||  |  |  | |||  ||| | ||    ||  || || |    | ||||  |||| || |              
GCTCTAACTTACTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGgtatgctcaacttgtctctttttctttttccagaacctgtatttcttatggcagctactttaacatcatctagcttgttcagatgact--atattacctttt-----------

upper sequence: GLYMA01G43910.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 5'ss of exon 5
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgt---gtttgttactttttttttatctg-----tgttctcttagttgca-ttacctgaa----attaaggttatctctacgactggatatcacataggagccaaacaca
 | || || |||||||| |||||||| ||||||||  | ||||||||||| ||||| || ||| |||||||      ||||  |||||| ||| ||       |||  |  |  | |||  ||| | ||    ||  || || |    | ||||  |||| || |              
GCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGgtatgctcaacttgtctctttttctttttccagaacctgtatttcttatggcagctactttaacatcatctagcttgttcagatgact--atattacctttt-----------

upper sequence: GLYMA01G43910.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgta-tgtgtttgttactttt--tttttatctgtgttctcttagt---tgcattacctgaaattaaggttatctctacgactggatatcacataggagccaaacaca
   |||||||| |||||||| ||||| || ||| ||||  |||||||||| |||||||||||| ||||| |  | |  || |||||  ||||| | ||| |    |  ||   |  | | ||| || | |   || | |   |  |||||||| |                 
GAGATCATAAAAGACCCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGgtaattcgatattttcttttggtttttgtttgtttctcgtctgtgcttataattcctcaattca--cttctttactctgctggatattag----------------

upper sequence: GLYMA01G43910.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 5'ss of exon 5
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgtttgttactttttttttatctgtgttctcttagttgcattacctgaaattaaggttatctctacgactggatat-cacataggagccaaacaca--
 | |||||    || ||||||||||| || || ||||||||| | ||||| |||||||||||| |||||||| |   ||| |   || ||   ||| || | ||| |     | | |||||   |    | | | | ||  | | |  |  ||    | | ||||||  
GCCATCATTCGAGATCCATTTATGCTGAACAGCGTCATCTTGATTTTTGCAAACAAACAGGACATGgtatgt-tgcattagtggattcttgattgtttttttttaatcttgct-catgaaagatataaaagcac-atgaaggaaaacacggattctggtctaacacaga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328920|gb|GR833292.1|GR833292
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
EST: gi|7234403|gb|AW569741.1|AW569741
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
EST: gi|192309410|gb|FG999833.1|FG999833
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTC-TTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
EST: gi|151396333|gb|EV266210.1|EV266210
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
EST: gi|254345773|gb|GR859420.1|GR859420
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
EST: gi|151393667|gb|EV263542.1|EV263542
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCAATGACGCCAATGGAAGTGTGTGAAGGACTAGGTCTCTTTGAT