1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTGCTGGGGCTATAGAGTTTATTATATGCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttcaaaacacaccgttttatagcagtttaattgttaggaagaatttgagagctgtgtacattcttttgtaaatagtcagtcttacccatatatttgtttttgaaacttttcag
species | Glycine max |
transcript | GLYMA01G43470.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCATGCAGAGGTCTCAATTGCATTTGCAG-CGTACGAGAAGATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAEST: gi|209718138|gb|BW657797.1|BW657797
genomic: CCATGCAGAGGTCTCAATTGCATTTGCAGAAG-AAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
EST: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAAATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAEST: gi|308097989|gb|HO761160.1|HO761160
genomic: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
EST: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAAATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAEST: gi|193465110|gb|FK432015.1|FK432015
genomic: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
EST: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAEST: gi|213593798|gb|DB957918.1|DB957918
genomic: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
EST: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAAATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGACAATTGTEST: gi|209718875|gb|BW669062.1|BW669062
genomic: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGACAATTGT
EST: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAAATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAEST: gi|16996081|gb|BM085453.1|BM085453
genomic: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
EST: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAG CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAC
genomic: GCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttc ... aacttttcagCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGGGGCTATAGAGTTTATTATATGCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGgttctccttcaaaacacaccgttttatagcagtttaattgttaggaagaatttgagagctgtgtacattcttttgtaaatagtcagtcttacccatatatttgtttttgaaacttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG