Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGCGAACAGgtcagatgtcagtttttcaggctgtttaattgtctgctgatatttcatgcctgggctagacagtccctttgaggtcttacattggttttttcatacggcctttgttgggggttgaatttgttgcatatttggcttgcag

Basic information

species Glycine max
transcript GLYMA01G41800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G47490.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGCGAACAGgtcagatgtcagtttttcaggctgtttaattgtctgctgatatttcatgcctgggctagacagtccctttgaggtcttacattggttttttcatacggcctttgttgggggttgaatttgttgcatatttggcttgcag
|||||| |  ||||| |  |||| ||||||| | ||||||||||||||||| || || |||||||| || |||||| | ||  ||||||||||  |||||||    |||   | ||    ||| |  || |      ||   | |  ||| |||  |           | || |||||| |||| |                                                     
TCTTCTGGCTTCTGGCAGGAAGATGGAGGCTCTCCAATGTGCACAAGAAGGTCATTTATGGGGACCAGCGCTTGTTATCGCAGCACAACTTGGGCAACAGgtt---tgtttctcttgattgctatagaactaaacattgcactgtagtgcttgg-ttgactgacttggtcgatgtctta-attgatgcag-------------------------------------------------

upper sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 4
TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGCGAACAGgtcagatgtcagtttttcaggctgttta--attgtctgctgatatttcatgcctgggctagacagtccctttgaggtcttacattggttttttcatacggcctttgttgggggttgaatttgttgcatatttggcttgcag
|||||| || ||||| | |||||| |||||| |||| |||||||||||||| || |||||||||||||| |||||||| ||| ||||||| || || |||||  | |     || || |     ||||  ||| | | |  | |    ||| ||||       | |    ||| ||| |    ||||  |    || | |                                         
TCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTCTTGCTGCACAACTCGGTGATCAGgtttg-tcctgattcttaaactcatttatcatttttttccaaca----atgactggc---agtaatttgcttg-ggtgtggttttggaatca--atgcag-----------------------------------------

upper sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0021g02730.t01 (Vitis vinifera), 5'ss of exon 5
TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGCGAACAGgt-cagatgtcagtttttcaggctgtttaattgtctgctgatatttcatgcctgggctaga-cagtcccttt---------gaggtcttacattggttttttcatacggcct---ttgttgggggttgaatttgttgcatatttggcttgcag----
 |||||||||||||| | ||| ||||||||||||  |||||||  |||||| ||||| |||||||||||||||||||||||| | |||||||| || ||||| |  ||   ||  | |     ||||    | ||   |  | |  |||   ||   | |  || |||   |         ||  || | | |||| | |   |   |   |   || ||  |     | | | |||  |  ||   || ||     
GCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTCTGGCTGCTCAACTTGGTGATCAGgttctcatacaagcatatttaattgttc---tttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcag