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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagtatgtagtatcttcattacaataatccacactgaggttttcttttttttcctttagtaatattttcttatattgaatgtatacgatgaagtttgtatggtagtctcataaccttatatttttctttttcttgcag

Basic information

species Glycine max
transcript GLYMA01G39330.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183033|gb|HO028296.1|HO028296
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|192326076|gb|FK016228.1|FK016228
EST:     TATTTGTAGCCAGGATTTCCACAATCAGTAACAGAAGCTACTTTCAGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: TATTTGTAGCCAGGATT-CCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|193362647|gb|FK327389.1|FK327389
EST:     ATATTTGTTGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|254318602|gb|GR832770.1|GR832770
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGGTATACG                   
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTC---A-G-A-A-Ggtatacgagt ... tttc
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGGTATACG                   
genomic: ATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTC---A-G-A-A-Ggtatacgagt ... tttc

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGgtatacgagtatgtagtatcttcattacaataatccacactgaggttttcttttttttcctttagtaatattttcttatattgaatgtatacgatgaagtttgtatggtagtctcataaccttatatttttctttttcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC