Sequence
atgc intronic sequence ATGC exonic sequenceAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGgtaggtatttttgaatatccctcaggggattcggtaagagtttcattcatattaggttctttgtttcttgtatcttctgttcaacattttcacgagttat...
Basic information
species | Glycine max |
transcript | GLYMA01G38120.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G50670.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGgtaggtatttttgaatatccctcaggggattcggtaagagtttcattcatattaggttctttgtttcttgtatcttctgttcaacattttcacgagttat------
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AACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGACCAATTAAACGGgtaggttattctgagcattcccttgctggttcggtaagaattt-----gtgtaatggcttccctctctagagctctttgctcaat-ttgttttattttatctacaa
upper sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 6
AGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGgtaggtatttttgaatatccctcag-gggattcgg----taagagtttcattcatattaggttctttgtttcttgtatcttctgttcaacattttcacgagttat
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AACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactttagagcatccccaagtggggttcaggttattgacttttgacttcggtaagaggttcagttacctctgtctattttctggtggtttctttc-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208152647|gb|GD950466.1|GD950466EST: TCATATGGTCCAATCAAACGG GTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTC
genomic: TCATATGGTCCAATCAAACGGgtaggtattt ... tgtgatttagGTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGgtaggtatttttgaatatccctcaggggattcggtaagagtttcattcatattaggttctttgtttcttgtatcttctgttcaacattttcacgagttat
- - - - - - - - AGAGCA
- - - - - - - - GAGCAG