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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgatatgtaatttgtatttttgctttctgtagcattagaaaatatatataagatggggaattattggaaaatctaatttggcatcaccaaaatttcatt...

Basic information

species Glycine max
transcript GLYMA01G36040.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36040.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 6
GCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgatatgta-atttgtattt-ttgctttctgtagcattagaaaatatatataagatgggg-aattattggaaaatctaatttggcatcaccaaaatttcatt
|||||||| ||||||||||| ||||||| |   || |||||||| | |||||||||| |||| |   ||||||| || ||| ||||||||||||| | |   | |  |||| || ||||||||| | |    || | |  ||| |    ||     |  |||  |     |  || |   ||| |  |        
GCACTTCTGGATTATGAAAGGCATAAAACACGTGGCGGTGAGCTCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatcatacctgtaattattgctttcttttgttggagtagaggtatctcgactgtaatgaaaatttaagttgatggttggatgtcatctcagccaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208132242|gb|GD929839.1|GD929839
EST:     TGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAG                         GCCTCTGTATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAG
genomic: TGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgatatgta ... gcaaattcagGCCTCTGTATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAG
EST: gi|208178164|gb|GD976507.1|GD976507
EST:     TGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAG                         GCCTCTGTATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAG
genomic: TGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgatatgta ... gcaaattcagGCCTCTGTATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAG