1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACCAGAGGAAGAATCCTCAGAACCTGAAAATCCATCAAAGGACAACATGGATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccgataacccaataacccctttcaaaagatatcttgtactaatcaaagggaaatcatgattttagaaattagtatagtttcatatactagcat...
species | Glycine max |
transcript | GLYMA01G36030.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAG TTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAACEST: gi|208327866|gb|GE124614.1|GE124614
genomic: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccg ... ttcattgcagTTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAAC
EST: ATTACACACTTCTTGTCTTTTCTTCAATTGAATCTGAGGAGAATGTGAAG TTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAACEST: gi|13478700|gb|BG508070.1|BG508070
genomic: ATTACACACTTCT-G-CTTT-CTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccg ... ttcattgcagTTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAAC
EST: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAG TTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAACEST: gi|21994213|gb|BQ785741.1|BQ785741
genomic: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccg ... ttcattgcagTTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAAC
EST: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAG TTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAACEST: gi|151396933|gb|EV266806.1|EV266806
genomic: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccg ... ttcattgcagTTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAAC
EST: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAG TTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAAC
genomic: ATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccg ... ttcattgcagTTACCAGTCTCAGCTAAAATCAAACACCAAATTGGAAAGCTTTTAGTCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGAGGAAGAATCCTCAGAACCTGAAAATCCATCAAAGGACAACATGGATGATTACACACTTCTGCTTTCTTCAATTGAATCTGAGGAGAATGTGAAGgttgctaccgataacccaataacccctttcaaaagatatcttgtactaatcaaagggaaatcatgattttagaaattagtatagtttcatatactagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA