1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgccttcatcttgcaatatatcacattctgtgttttaggtatttattaacatgtatgatggcctttcctgtgtag
species | Glycine max |
transcript | GLYMA01G35190.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTEST: gi|14205773|gb|BG839451.1|BG839451
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTEST: gi|254345622|gb|GR855958.1|GR855958
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTEST: gi|192299757|gb|FG990052.1|FG990052
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCCTCAGTCTTATCTGTATACCTCTAAAGTEST: gi|26048711|gb|CA785164.1|CA785164
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTEST: gi|22522544|gb|BU081355.1|BU081355
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTEST: gi|298163466|gb|HO012199.1|HO012199
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
EST: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATG GTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
genomic: CGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgcct ... tcctgtgtagGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGgtacgcgccttcatcttgcaatatatcacattctgtgttttaggtatttattaacatgtatgatggcctttcctgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA