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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGAATCTTGTTTGATCAGgtataactggtgtttaataaatgcttccaagttctaactaaaccttgtttcttcctatttgtaacttggattggcttgtgatgtatcaacag

Basic information

species Glycine max
transcript GLYMA01G26690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G26690.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 4
GAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGAATCTTGTTTGATCAGgtataactggtgtttaataaatgcttccaagttctaactaaaccttgtttcttcctatttgtaacttggattggcttgtgatgtatcaacag
|||||| || || || ||||| |||||| | ||||||||||  ||||||||| |||  |||||||||||||| |||||||||||| |||| ||||||||||||||  |  | ||||   |    |      ||  || | |   || |  ||  || ||  |     ||| ||| |                
GAGGGTAGCATTGTATTTAGCACAAGCTTTGGAATATTGCAGCAGTAAAGGACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtata--ttatttttaccta----tcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacag-----------

upper sequence: GLYMA01G26690.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 4
GAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGAATCTTGTTTGATCAGgtataactggtgttta---------ataaatgcttccaagttctaacta--aaccttgtttcttcctatttgtaacttggattggcttgtgatgtatcaacag
| | ||  |||| ||  | || || ||| ||||  ||||  | | ||         ||||||| |||||||||||||||||| |  || |||||||||||||||  ||  |  | |         || ||| |  ||||||  |   ||  |  |||  | ||   | | | ||      |   |  || | |          
GCGAGTTTCTTTGTATATTGCACAGGCTTTAGATCATTGTGCCAATAGTAATCTACGTTTGTACCATGATCTCAATGCCTACCGCGTCCTGTTTGATCAGgtatctctttttgtgagacacgagaatgaattcgaccaagtcattgttacgagtcttactcctcggtctctatattccaaagaagaatgagcttgggtgg---