1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcctttcttttagtaaattgctggaatatttagtagtgtgagaatacatttttgtagatctcggatgttcaatctcctttattacaagtaaag...
species | Glycine max |
transcript | GLYMA01G12340.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|208288972|gb|GE088009.1|GE088009
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|254330187|gb|GR839740.1|GR839740
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|31309088|gb|CD394291.1|CD394291
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACCAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|13252312|gb|BG363215.1|BG363215
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|254314431|gb|GR832016.1|GR832016
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|9564183|gb|BE473692.1|BE473692
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|11275201|gb|BF325524.1|BF325524
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|10255901|gb|BE823667.1|BE823667
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|254338283|gb|GR849808.1|GR849808
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|7590561|gb|AW706311.1|AW706311
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|193630140|gb|FK585309.1|FK585309
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|8670479|gb|BE191586.1|BE191586
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTATCG GGTTCAAGTGCCATCTTCAGCGCTGATCCTTGTGGTGACTCAAGAGACAACEST: gi|31466806|gb|CD408834.1|CD408834
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|7028815|gb|AW458598.1|AW458598
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATACTCAAGCTACTTTGTCTAAGTGTTCT GGTTCAAGTGCCATCTACAGCGCTGATCGTTTTGGTGACTCAAGAGACAACEST: gi|31474882|gb|CD416910.1|CD416910
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: GAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACEST: gi|22524240|gb|BU083051.1|BU083051
genomic: GAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
EST: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCG GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
genomic: AGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcc ... ttaatttcagGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGgtatgtgtcctttcttttagtaaattgctggaatatttagtagtgtgagaatacatttttgtagatctcggatgttcaatctcctttattacaagtaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT