Sequence
atgc intronic sequence ATGC exonic sequenceTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgttatattttatattttgattgaacctgattgtccattcaatttgtgatagcaaatttacttataagaatatagttgaattaaaatat...
Basic information
species | Glycine max |
transcript | GLYMA01G09660.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgttatattttatattttg--attgaacctgattgtccattcaatttgtgatagcaaatttacttataagaatatagttgaattaaaatat
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TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctaccaatgaattccagttttatgttttttctcccttataaatggaatttcagttttatgtttga-tagctaca-
upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 6
TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgttatattttatattttgattgaacctgattgtccattcaatttgtgatagcaaatttacttataagaatatagttgaat-taaaatat------------------------------------
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CTATGATATATATCTTCTTCCTCCGGGTGAAGATCCAGAGTCGTGCCAATCATATTTGAGGATGCGGAATAAAGATGGAAAGTACAGCCTTATGTTTGAGgtttgttcagagtttattttccatgttctcatc-aatatgactattcaat--atctggaaaagctgaca-atccctctgattctggtaagatgcttagtatctggtgaataactgtggttctggttttgacaaccag
upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 5
TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttg--gttccttgttatattttatattttgattgaacctgattgtccattcaatttgtg---atagcaaatttacttataagaatatagt-tgaattaaaatat
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CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtgagccgcttcaaatttgaatctctttgttgac--agttttaaaggtcctgagatttatatgtattactgctgctcttacatgattacaatgtttgctgaa----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15812935|gb|BI785210.1|BI785210EST: CATATTTACGGATGCGAAATAAAGATGGGAAATACAGTCTCATGTTTGAG GAATGGGTGACAGATAACCCATTTGTCATATCACCAAGAATTACTTTTGAG
genomic: CATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttggttcc ... aacttttcagGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgttatattttatattttgattgaacctgattgtccattcaatttgtgatagcaaatttacttataagaatatagttgaattaaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG