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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcattataagttttggctatgcatacatgattttcttcagaaatttgcacaaagccattttattctttgtagaaaataagtaaattctttgtat...

Basic information

species Glycine max
transcript GLYMA01G07070.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21638509|gb|BM139555.1|BM139555
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGT
EST: gi|18735212|gb|BM528632.1|BM528632
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|192303428|gb|FG997458.1|FG997458
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTTTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATTTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|12773324|gb|BG238251.1|BG238251
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATT
EST: gi|58019744|gb|CX706486.1|CX706486
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|58019157|gb|CX705899.1|CX705899
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|21889266|gb|BQ742479.1|BQ742479
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|208039840|gb|GD842502.1|GD842502
EST:     GAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|214004600|gb|DB988970.1|DB988970
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|12773840|gb|BG238767.1|BG238767
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|23733546|gb|BU764972.1|BU764972
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|58015355|gb|CX702097.1|CX702097
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|58019309|gb|CX706051.1|CX706051
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|58022129|gb|CX708870.1|CX708870
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|192302132|gb|FG995812.1|FG995812
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTTTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATTTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|26057311|gb|CA800225.1|CA800225
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
EST: gi|58018950|gb|CX705692.1|CX705692
EST:     GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAG                         CATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT
genomic: GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAATAGTCAGAAATCTAAGGTACTCTCAAAGAGGACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAGGACAGCATAAAAGCTGAAGAAACCAAACCTTCTGAGCCTGAGgtgtgtgcattataagttttggctatgcatacatgattttcttcagaaatttgcacaaagccattttattctttgtagaaaataagtaaattctttgtat

- - - - - - -  AAGCTG
- - - - - - - - AGCTGA
- - - - - - - - - CTGAAG
- - - - - - - - -  TGAAGA
- - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaataa