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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAGAATCAATGCGGATCATGGGTTACTATATGGACTCATCAATTTGGATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttttctcattaaagaattaattatctcctgctccttttgttgtttatgttattcagtttctgattataattttattacatataattgtaaaaa...

Basic information

species Glycine max
transcript GLYMA01G05860.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312704|gb|FK004392.1|FK004392
EST:     ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG                         GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
EST: gi|22525497|gb|BU084308.1|BU084308
EST:     ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG                         GAATGGAGCGAAGGAACTTATCCTCCTTGG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGG
EST: gi|193521509|gb|FK481698.1|FK481698
EST:     ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG                         GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCG
EST: gi|11412343|gb|BF424354.1|BF424354
EST:     ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG                         GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
EST: gi|193445872|gb|FK414951.1|FK414951
EST:     ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG                         GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
EST: gi|192312705|gb|FK004393.1|FK004393
EST:     ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAG                         GAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG
genomic: ATTCCAGACCTCATCGAAATACAGATAGCAAATGGTACATCAGCCCAGAGgtaagatttt ... taccttaaagGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTG