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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATGTTCCTATCAGCACTGTGACATAGGATCAACTTTCATACCAAAGCTTCAGGGGAAATTTTTGGCCACAGAAAATTTCTTTTACACATCAAAGgttcttttactgttgtctagtataattgtgtatttttgttattgtcttaaagggatgcattggagaatggaaattatagtaatgtgctgtaatcctatta...

Basic information

species Glycine max
transcript GLYMA01G05750.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05750.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 6
AATCATGTTCCTATCAGCACTGTGACATAGGATCAACTTTCATACCAAAGCTTCAGGGGAAATTTTTGGCCACAGAAAATTTCTTTTACACATCAAAGgttcttttactgttgtctagtataattgtgtatttttgttattgtcttaaagggatgcattggagaatggaaattatagtaatgtgctgtaatcctatta----------------------------------------------------------------
|   |||||| ||||| |||||   | |||| |||||||| || || |||||||| || || |||||||| ||||||||||||||||| |||||||||||  |  |  | |  |||  | |  |     |||| |  | ||       ||  || |||| ||      | | |||| |  | |  |   ||   ||                                                                  
AGAGATGTTCATATCATCACTG---CTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggt-ttttcatctcttcttgtaaaagatttcttct-ttcctaagtagcaatccatttgaagtgaaacaatataatgtttttgtaagatttcatgctttaacttgtgaatgcttatatgttctgatgtatgattttttatgctcccttttactcaattag