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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatcttgacagagtatttactagctgaaatataaatcttaaacgtctgtttttcattatctgtcagtcatttgttttccacagtccgattggacagca...

Basic information

species Glycine max
transcript GLYMA01G04920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atcttgaca-gagtatttactagctgaaatataaatcttaaacgtct-gtttttcattatctgtcagtcatttgttttccacagtccgattggacagca-------------------------------------
 || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   |||    || || ||  ||||  |||  |   ||  |||     | |  |||||     |   |     |   |  |   |||    ||   || || |                                     
AAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttagacag

upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
------GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atcttgaca-gagtatttactagctgaaatataaatcttaaacgtct-gtttttcattatctgtcagtcatttgttttccacagtccgattggacagca---------------------------------
       || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   |||    || || ||  ||||  |||  |   ||  |||     | |  |||||     |   |     |   |  |   |||    ||   || || |                                 
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02710.2 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atcttgaca-gagtatttactagctgaaatataaatcttaaacgtct-gtttttcattatctgtcagtcatttgttttccacagtccgattggacagca---------------------------------
 || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   |||    || || ||  ||||  |||  |   ||  |||     | |  |||||     |   |     |   |  |   |||    ||   || || |                                 
AAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208134885|gb|GD927498.1|GD927498
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGAATGA
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatcttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGA-TGA
EST: gi|254348791|gb|GR852470.1|GR852470
EST:     CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG                         GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatcttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGAT