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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaagcttccttagtgcttataaccaacctctgatagttataattgctttttcttatgtttctatgtcgttatctgcag

Basic information

species Glycine max
transcript GLYMA01G04400.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaag--ccaagcttcct-tagtgcttataaccaacctctgatagttataattgctttttcttatgtttctatgtcgttat-ctgcag--------------------------------------------------------------
||| ||||| |||||||||||||||||||||||| ||||||| || | |||||||||||||   ||| || |    || ||||| || || || ||||| |||||  || | || | | |     ||  |   || | ||| |  |  | |     |||   |   ||||  || | | || || |                                                                
TGGTAAATCTACAACATGTGTTGCCTTTATTCTTGCAATGTACAAGGAGGCTGGAATATTCACGCCTTTTGCAGAGTCGATTCAGGTGACCGAGTTCACTgtaagtacctaactacttgtccaagttgcaggaaaacactg-tgttcttcaacatgtttgaattcatttcgttgccatcattcttccattggttgatgccaaaagttccgaaattccctacaccaatctgactgtctacttctgcctcag

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G031824_T01 (Zea mays), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaagcttc---cttagtgcttataac----caacct-ctgatagttata-attgctttttcttat--gtttctatgtcgttatctgcag---------------
||| |||||||| || ||||| ||||| |||||| ||||||| || | |||||||||||||  |||| | ||    || || || || || || ||||| |||||  |    ||   ||||||   | || |    || ||| ||| | |   |  ||| ||   |||  |       | |||| ||   | | |               
TGGTAAATCAACTACTTGTGTCGCCTTCATTCTTGCAATGTACAAGGAGGCTGGAATATTCACCCCTTTCTCGGAGTCGATCCAGGTCACCGAGTTCACTgtaagtgacatctcatgcttagtctctctatctcttcatccttctgtttgacgtgcattactaagtctagtcaaaccttgtgtcatttgattctgcttcttctgcctcag

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaagcttccttagtgcttataaccaacctctgatagttataattgctttttcttatgtttctatgtcgttatctgcag
 || ||||| |||||||||||||| || || ||| ||||||| ||||| ||||| ||||||| |||| |  ||     ||||||||| ||||||||||| || ||      ||  ||  |  | |  | |||  |||     |||  ||| ||  |     | | |||   |   ||| | |||
CGGTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttctttttttttcttttcaatatcaaa-tctttccattaacattactcatgaacgtttatcttctttcgtattttcag

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 6
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagc-caagcttccttagtgcttataacca-acctctgatagttataattgctttttcttatgtttctatgtcgttatctgcag
||||||||| |||||||||||||||||||| ||   ||||||||||| ||| ||||| || || ||   ||||||||| |||||||||||||| ||||| |||||    | || ||||  ||  ||     |  | |||      |        ||  | | |  |  || |     |     |||
TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaattgctgtaacatggctttactactgctcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927479|gb|BU544618.1|BU544618
EST:     CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACA                         ATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA
genomic: CTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagccaag ... ttatctgcagATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTA