Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGATgtaagtgcccattcttgtcttctgccttctgccttctgattcattatagtaaatctgatatagacatcagaacgtaattggtcataaataaatatgattg...

Basic information

species Glycine max
transcript GLYMA01G03880.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020943_T01 (Zea mays), 5'ss of exon 6
GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGATgtaagtgcccattcttgtcttctgccttctgcct-tctgattcattatagtaaatctgatatagacatcagaacgtaattggtcataaataaatatgattg
|  ||||| ||||   || |||||||||||||||||||||||||||  |  | || ||  | |||     |||     || |    |||||||||      |  | | || ||  | |  ||  ||     ||         |   | |  | | ||   ||  |   ||   |  |  |  ||| | | 
GGTTTGCATTGCTTTGTGCTGCTGGCTTCTTTGGTTATATGCTTGCGATGCTCCAACGCCGGCTTTTAGGAATGTCATCAACAACAGATgtaagtttgtcatacttttttatgtgtaccacccctcctccccacccccaatgaaaaggtgcacatatgtaaatttg-ctgacaagtagaatttataacta

upper sequence: GLYMA01G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G031479_T01 (Zea mays), 5'ss of exon 6
GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGATgtaagtgcccattcttgtcttctgccttctgccttctgattc-attatagtaaatctgatatagacatcagaacgtaattggtcataaataaatatgattg-
|  ||||| ||||   || |||||| |||||||||||||||||||||||  | || |   | |||     |||   | || |     ||||||||      |  | | ||     || |  ||  || ||  |  | |||   | |    | |   | ||   | | |  |  | |   | || | |    
GGTTTGCATTGCTTTGTGCTGCTGGTTTCTTTGGTTATATGCTTGCATTGCTCCAACACCGGCTTTTAGGAATGCCGTCAACAATCAATgtaagtttgtggtacttttttagaatttataactagtgtttggaccacagtt--tgtaggcttgctctaagccagcactctgctacatgcatatttcaccat