1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttttttttcctttactatgtttagttctctaatgatatgtaacatctacttattttgctttttatttcatatttgttattcatttgattag
species | Glycine max |
transcript | GLYMA01G03610.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAA-G--- ATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAATEST: gi|213604401|gb|DB983489.1|DB983489
genomic: TCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
EST: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATAATATGACAAGATAA A----TCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAATEST: gi|209726208|gb|BW659573.1|BW659573
genomic: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
EST: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAG--A- -TTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAATEST: gi|208073965|gb|GD871550.1|GD871550
genomic: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
EST: TCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAA-G--- ATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAATEST: gi|193449022|gb|FK413817.1|FK413817
genomic: TCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
EST: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAA-G--- ATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAATEST: gi|207774007|gb|GD745523.1|GD745523
genomic: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
EST: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAG--A- -TTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAATEST: gi|15662606|gb|BI699977.1|BI699977
genomic: TACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
EST: ATTTGAAGCCAAATTCTATGACAA-G--- ATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
genomic: ATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTTGGACCAATTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGGTAAgttttttttttttttcctttactatgtttagttctctaatgatatgtaacatctacttattttgctttttatttcatatttgttattcatttgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC