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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAGTAACTGGTTTAGTTGGAGCAAATTTTGTGCAAGCAACACTAGATAAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctgtaattcatagaaccattcattctgcagtccaattttcaattaccatcatagttagtggtcattgacagtgcttctgaatgtgcactgtca...

Basic information

species Glycine max
transcript GLYMA01G01340.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01340.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0056g01690.t01 (Vitis vinifera), 5'ss of exon 7
TTGTAGTAACTGGTTTAGTTGGAGCAAATTTTGTGCAAGCAACACTAGATAAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctgtaattcatagaaccattcattctgcagtccaattttcaattaccatcatagttagtggtcattgacagtgcttctgaatgtgcactgtca-
||||| |||||||| | |||||||| |||||||||||||||   || ||||| ||     | || ||||| |||||||| ||||||||||| |||||||||||| |   ||   | |    || ||    | | || |   || |  |  |   |  ||| |   |     | || |     ||  |   |   || ||  
TTGTACTAACTGGTCTGGTTGGAGCTAATTTTGTGCAAGCAGTGCTTGATAAGCTAAAATTCCGAGATCCTATTGCTCGAGGAATAGCAACTGCATCTAGgtatgtatagtttcttaccttacaatattatatcca-tgagatatgtatatttaaggatattgtatcccattggaaatcatatcctatactatcctatcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933413|gb|BU550552.1|BU550552
EST:     AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAG                         TTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
genomic: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctg ... atttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
EST: gi|192322156|gb|FK014052.1|FK014052
EST:     AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAG                         TTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
genomic: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctg ... atttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
EST: gi|14999186|gb|BI320247.1|BI320247
EST:     AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAG                         TTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
genomic: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctg ... atttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT