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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAGgttcttgctctttgttctgtatttcttatgttttaacttgttcacagagaagacattagggaaatgtacaaaaaggatatgtgataaaaaaaattccagg...

Basic information

species Glycine max
transcript GLYMA01G00430.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00430.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G07050.1 (Arabidopsis thaliana), 5'ss of exon 5
GTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAGgttcttgctctttgttctgtatttcttatgtttt-aacttgttcacagagaagacat---tagggaaatgtacaaaaaggat-atgtgataaaaaaaattccagg
||||||||||  | ||||||||| |||||||| || ||||| |||||||||||||| || |||||  | || ||| | |||||||||       |  | |  ||| ||  | |  || | ||||| |  || |   | |  |           |||    ||  | | || |||  |||  | |      
GTACTTGGAGCTTTTGAATGGTCCGGAAATAACCCACTGCCACCTGAGATATGGCTTCTCCCATATTTCCTGCCAATACATCCAGgtaaaatgacaatctcatgtgttcttgactttctcaacttatatactgtttaaatttattcttttccctgtctccaattgttgatctgactaaactattc-----

upper sequence: GLYMA01G00430.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 5'ss of exon 6
GTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAGgttcttgctctttgttctgtatttcttatgttttaacttgttc-acagagaagacattagggaaatgtacaaaaaggatatgtgataaaaaaaattccagg
||||||||||| | |||||||||||| |||||||| ||||||||||| |||||||| ||||| || || || ||| | ||||||||||  | ||| || || | | ||| ||   || ||   | ||  || ||  | |   |    | ||         |  |    |||   |  | | |||  
GTACTTGGAGTATTTGAATGGTCTGGCAATAATCCTCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAGgttgcttctcatt-ttgtatttttttttctttctagaatattggactgactaaaacctttatacatcctgttttggatttaaagattggactagtcccata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495719|gb|EH223886.1|EH223886
EST:     CCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG                         GAAGGATGTGGTGTCACTGCCGGATGGTCTAT
genomic: CCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAGgttcttgctc ... tgcattacagGAAGGATGTGGTGTCACTGCCGGATGGTCTAT
EST: gi|120531698|gb|EH259831.1|EH259831
EST:     CCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG                         GAAGGATGTGGTGTCACTGCCGGATGGTCTATTTGCCGATGTCCTACTTAT
genomic: CCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAGgttcttgctc ... tgcattacagGAAGGATGTGGTGTCACTGCCGGATGGTCTATTTGCCGATGTCCTACTTAT