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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgattgtttccttttacacctcccactctcatctgttacccgcacatttgtattttaaaaaagttataaactaacattgtaaactgatgttacag

Basic information

species Glycine max
transcript GLYMA0169S00210.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0169S00210.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G52880.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagt-gatt-gtttccttttacacctcccactctcatctgttacccgcacatttgtattttaaaaaagttataaactaacattgtaaactgatgttacag
||||| |||||||| ||||| ||||||||||| |||||||||||||| || |   |||||||| | ||||| || ||||| | ||| || |||||||| ||||||| || | || ||||||| |   ||    | | || | | ||      |   ||| |  ||| ||  | |  ||  |                     
GCTGTAGTTGTTGGCGGAGGTTACATTGGTCTTGAGCTTAGTGCAGTTTTAAGGATCAACAATTTAGATGTCACTATGGTTTTCCCTGAACCTTGGTGCAgtaagttgactagtatccttttgctattca---tgtaatatatgacattgttacacgtaatgaaaacaaaatgttgacgcag--------------------

upper sequence: GLYMA0169S00210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 5'ss of exon 6
GCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgattgtttccttttacacc--tcccactctcatctgttacccgcacatttgtattttaaaaaagttataaactaacattgtaaactgatgttacag
|||||| ||||||| || || ||||||||||| ||||||||||||||| ||||| |||||||  | ||||||  |||||| || || || || ||||| |||||||      || |   |  ||   |||     ||   |  |  | ||    || | | ||       | |  |  |||   |   |||| ||||| |  
GCTGTGATTGTTGGAGGGGGGTACATTGGTCTCGAGCTTAGTGCAGTGATGAAAATCAACAACTTAGATGTTTGCATGGTTTATCCAGAACCATGGTGCAgtaagtatagaattaccaatgaactgatcctgtattctggttctgactgctagattctttgtttgtcct-taaagatttaagggttccaactaatgttgct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098764|gb|HO760505.1|HO760505
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgatt ... gatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
EST: gi|23725657|gb|BU760790.1|BU760790
EST:     TCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
genomic: TCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgatt ... gatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
EST: gi|193622620|gb|FK569658.1|FK569658
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgatt ... gatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTA