1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' | 51 5' 3' |
AGTTATCCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctttattttgcttgtgtaattttctcgttttgatacagattatgggtatcctccacaggttactaaccaaatctcttattttctctatgcaatttttcttgtcttttgccag
species | Glycine max |
transcript | GLYMA03G27270.1 |
intron # | 51 |
splice site | 5' |
intron type | U2 |
EST: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAG AATCCTANGTACAATTTCTGGAACCGGGAGTT-CATAAGATGTGCGCCAGAEST: gi|208340282|gb|GE133240.1|GE133240
genomic: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctt ... cttttgccagAATCCTAGGTACAATTTCTGGAACCGG-AGTTTCATAAGATGTGCGCCAGA
EST: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAG AATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAGEST: gi|10237567|gb|BE806455.1|BE806455
genomic: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctt ... cttttgccagAATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAG
EST: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAG AATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAGEST: gi|17021637|gb|BM092671.1|BM092671
genomic: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctt ... cttttgccagAATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAG
EST: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAG AATCCTANGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAGEST: gi|22930591|gb|BU547730.1|BU547730
genomic: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctt ... cttttgccagAATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAG
EST: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAG AATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAG
genomic: ACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctt ... cttttgccagAATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTATCCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGgtatattctttattttgcttgtgtaattttctcgttttgatacagattatgggtatcctccacaggttactaaccaaatctcttattttctctatgcaatttttcttgtcttttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT