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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACCTAGTAGGTGAATCAGACATTGCTTCTTTGGTCCAGCGGATAAGGgttggtgtctttgtcttcctattctatctaagagttattattttaattttatttcattattttgagctccatatgaacgtggctgtgtttttaattcag

Basic information

species Glycine max
transcript GLYMA20G38450.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38450.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 5
ACTGACCTAGTAGGTGAATCAGACATTGCTTCTTTGGTCCAGCGGATAAGGgttggtgtctttgtcttcctattctatctaagagttattattttaattttatttcattattttgagctccatatgaacgtggct--gtgtttttaattcag----
| ||| || || |||||  |||| |||||||| |||||||||||||||| |||||||  |||   |||| |  |       |  | | | |||||  | |||||   |  ||||| | |   |  ||  ||||    ||  ||||  |  |     
ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttg--cttcttgctt----ggatggctttcatttt--tcttattgtttcgttttg-gatgtgttggactgtggtgtggtacttttgctgaaagcag