1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAAAGGGAGTATACTTTATTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgtgaagtagattccattatctgcctgtcctcatatacaatttgcgatttttaagaccttgatgatgcttttgtatgtatttgtatttaaatt...
species | Glycine max |
transcript | GLYMA20G37700.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAA GTAACTGGTGAAAGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCAEST: gi|151396984|gb|EV266857.1|EV266857
genomic: TAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgt ... attatgctagGTAACTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCA
EST: TAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAG GTAACTGGTGAAGGAGATGACGAATATCTGATTGCAACAGCTGAGCAGCCAEST: gi|13788033|gb|BG650625.1|BG650625
genomic: TAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgt ... attatgctagGTAACTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCA
EST: TAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAG GTAACTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCAGAGCAGCCA
genomic: TAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgt ... attatgctagGTAACTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGGGAGTATACTTTATTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgtgaagtagattccattatctgcctgtcctcatatacaatttgcgatttttaagaccttgatgatgcttttgtatgtatttgtatttaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC