Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatattatttatgttgattgtacaagtagtcctgtgtaattacaaatgaaggcatgttcacttttagaaattgttttctgttttcaagtatttgtaaag...

Basic information

species Glycine max
transcript GLYMA20G28970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 4
GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatattatttatgttgattgtacaagtagtcctgtgtaattacaaatgaaggcatgttcacttttagaaattgttttc--tgttttcaagtatttgtaaag
||||||| ||||||||| || || || || || ||||||||||||||||| |||||||||||||| || || || ||||||||  | || || ||||| |||| |   || |  |      |      |||  ||  |  |||      ||| || |  || | ||| |  || || ||  |  |||  ||           
GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaagatttgacttaagagattgttacagttttggtt--ttattttataagtca-gcccaatctta-atgttattctccttactttgtag-----------

upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 4
GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatattatttatgttgattgtacaagtagtcctgtgtaattacaaatgaaggca-tgttcacttttagaaattgttttctgttttcaagtatttgtaaag----------
||||||||| |||| ||||| |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || |||||  | || || |||||||||| || |   |||        | ||| ||| |  ||||| ||  | |      | ||||  |  ||  |||||| | |   ||| | |   | | |              
GATATTAGAGCACCTCAACGTCTTGGAGAAGGTTTGGAGTCATGGTGTGGATTCTACCAGAGTATAAGACCTACTCAGATGGGTTTGTCACTGAATATTGgtaaataaaagatgg-------ataagaagttcc-tgtaaatattagttcttttactgttttcaattttaaattgctcttattttcccatcctctatttttgccttgttag

upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19862 (Selaginella moellendorffii), 5'ss of exon 4
GATATTAGAACACCG-CAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtat--attatttatgttgattgtacaagtagtcctgtgtaattacaaatgaaggcatgttcacttttagaaattgttttctgttttcaagtatttgtaaag
||  |||| ||   | ||||  || || || || |||||    ||| | || || ||||||||||||||||| || |||||||| ||||| || ||||||||||   |||||  |   |||| |||   ||  |  | | |  ||  |                                                       
GAC-TTAGGACGTAGACAACCCCTCGGTGACGGCTTAGAAAGCTGGCGAGGGTTCTACCAGAGTATAAGGCCCACGCAAATGGGTCTTTCTCTGAATATTGgtaaggattatgaaatgtgatggtatgtgttctgatctattgttgaag------------------------------------------------------

upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19863 (Selaginella moellendorffii), 5'ss of exon 4
GATATTAGAACAC-CGCAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtat--attatttatgttgattgtacaagtagtcctgtgtaattacaaatgaaggcatgttcacttttagaaattgttttctgttttcaagtatttgtaaag
||  |||| ||   | |||   || || || || |||||    ||| | || || ||||||||||||||||| || |||||||| ||||| || ||||||||||   |||||  |   |||| |||   ||  |  | | |  ||  |                                                       
GAC-TTAGGACGTACACAATCCCTCGGTGACGGCTTAGAAAGCTGGCGAGGGTTCTACCAGAGTATAAGGCCCACGCAAATGGGTCTTTCTCTGAATATTGgtaaggattatgaaatgtgatggtatgcgttctgatcttttgttgaag------------------------------------------------------