1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGCTGGGCCTTGGAGAATCTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaatgtcacaaatactttaatggtttccagacctgcttctcgtagattagaaaccaaatctcaaaatcccatccatcatgcttacagatggtgc...
species | Glycine max |
transcript | GLYMA20G24430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|21675910|gb|BQ628261.1|BQ628261
genomic: CCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|208182079|gb|GD979434.1|GD979434
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAEST: gi|208315134|gb|GE112650.1|GE112650
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAA
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|117557937|gb|EG702322.1|EG702322
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: GGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|208144636|gb|GD943045.1|GD943045
genomic: GGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|207790357|gb|GD760374.1|GD760374
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|193584350|gb|FK539868.1|FK539868
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: CCATCGACGTTGATATTCTGACACTTGGTCAANATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|207720220|gb|GD703979.1|GD703979
genomic: CCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTEST: gi|192312746|gb|FK003972.1|FK003972
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
EST: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAG CCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
genomic: ATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaat ... attgttgcagCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCTGGGCCTTGGAGAATCTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaatgtcacaaatactttaatggtttccagacctgcttctcgtagattagaaaccaaatctcaaaatcccatccatcatgcttacagatggtgc
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