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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGAGTGGGGCATTCCTGTTCCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatatgtattttatagcttgtgcgtgcttctctagtttcccttgactctattctataatcttatagttcctgtctatcataatcaatgactatca...

Basic information

species Glycine max
transcript GLYMA20G23250.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 5
TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGAGTGGGGCATTCCTGTTCCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatatgtattttatagcttgtgcgtgcttctctagtttcccttgactctattctataatcttatagttcctgtctatcataatcaatg-actatca--------
| |||||||| || |||||||| ||||| || |||||||| ||||| || ||  ||||||  |  ||||| ||||| || ||||||||||| ||| ||||||| |  | | |  ||      ||    |   |||  || | |    ||   || ||   || ||||   |      | ||| ||| |    |  || | |        
TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttc----tttacatgatattcattaatgtg---tgctcctgtttactagtcttgctggga--atttattatactagtcgtgcttttatttcttcg

upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G55400.2 (Arabidopsis thaliana), 5'ss of exon 4
TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGAGTGGGGCATTCCTGTTCCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatatgtattttatagcttgtgcgtgcttctctagtttcc-cttgactctattctataatcttata-gttcctg-tctatcataatcaatgactatca-------------------------------------------------------------------------
| || || ||||||||||| ||||||| ||| || ||||| ||||||||||| || ||| | |  || || |||||||| |||||||||||| |||| |||||   || | | || | |   |   |  |   | | | ||| |  ||| | ||| |  |||      | |  ||  || | | ||||||   ||| || |                                                                           
TAAGAGATTTTTCCATTTCTCGAGCATTAGTGGATTGGGGAATTCCTGTTCCCGACGACGATAAGCAAACCATATATGTTTGGTTTGATGCTCTACTTGGgtatatatcttttttctttctatcaagaat-tatatgtggttactgcttaagtctttgttatgtctccacacattgatgatatgtcataacttatgtctgttcatataaagaaaggttgtttctcttagttgcgagattaaacattgaagttaatatttgccgtttctcattgcag

upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGAGTGGGGCATTCCTGTTCCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatatgtattttatagcttgtgcgtgcttc-tctagtttccct-tgactctattctataatcttatagttcctgtctatcataatcaatgactatca-
||||||| ||||| |||||||||||||| || || |||||||||||||||||| ||||||| |  ||||| ||||| || ||||||||||||||||| |||||| |   | | |  | ||| | |    |  ||  | | |      | |||   |  || || | | || | ||  ||  |    |  |   |  |  |   
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaag---tttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531087|gb|EH259220.1|EH259220
EST:     CCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGG                         CTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTTAAAAC
genomic: CCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatat ... caatttgcagCTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTTAAAAC