Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatag

Basic information

species Glycine max
transcript GLYMA20G21190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgcttctattcttcatacattcttgatactat-ttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatag
 || ||||| |||||||| ||||| || |||||||||||||||||  | ||||| ||    || ||||||||||| || |||||||| || ||||||||||||    ||    ||   | ||| | || |  |||  || ||    | |    ||  | | || | ||| |||     | |  || || | ||  || | |                   
TGCTAAATCCATGAAGTTCAAGGACGGATACATGATTTCTTCTGGTTATCCTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtt----tgtacataaaatccatccgtt-tgaataaaatgttgctgtctccttgtgatagcttgaatttttttc----ttagaagctgcttcttgttttcag------------------

upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatag
 || || ||||||||||| |||||||| ||||||||||||||||| || ||||||||    |||||||| || || ||||||||||| ||  ||||||||||| |  |||||   |     ||    ||||  ||         ||       | | || ||  |  |  | ||    |  ||  ||     |                          
TGCTAAGTCTATGAAGTTCAAGGATGGGTACATGATTTCTTCTGGTCATCCTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtt-tggtgcttg-gtatcagatgttatcttattatgcaaacatataacaaaatagctg-ttagtaatactcta----gttgacttggcttcag-------------------------

upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgcttctattcttcatacattcttgatact-atttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatag
 || || || |||||||| ||||||||||||||| |||| ||||| |||||    || || ||||| ||  ||||||||||||||||  | || ||||||||    || ||  |     || ||  | |    || | | | |  ||    |  ||||  | || | ||| || |    | |                                      
TGCTAAGTCCATGAAGTTCAAGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAATACATCGATGCTGCAGTGAGACATGTTTTGCTCAGACAGgtatgctttctaatgagtctcttatctaccatttagtgagtaagtataccggctttgtctaatcttgttggttcaatccgtatttgcag-------------------------------

upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtta-ttttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgtt-ttacgatgaagagatgatgctaattgttattttgttgctgcctcatag
|||||| ||||||||||| || ||||| |||||| | || ||||| |||||    || || ||||| ||||||||||||||||||||  | || ||||| || | ||| |  |   || ||| ||     ||     ||  ||  |  |       ||  | | |   |||| |||    ||| |  |                                 
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttctta-----ttagagttaagtaaaaaatcaacaacgtctaattaaagtgttgttaaaccgaatatgtag-------------------------------

upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtt-attttgcttctattcttcatacattcttgatactatttat---catttttgg--gttgt--tgattcattttgtt--ttacgatgaa-gagatgatg--ctaattgttattttg-----ttgctgcctcatag
 |||||||| ||||||||||||||||| |||||||| |||||||| || || ||||| || || |||||||| || |||||||||||||| || |||||||||   ||  ||       || ||   ||| || | || ||| |   |||  |      |||   || |||||   |||  ||||  | |  |  ||  ||  || ||  |  | | |     ||||   |  | ||
TGCCAAATCCATGAAGTTTAAGGATGGGTACATGATATCTTCTGGTCAGCCAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacag

upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcat--tttgt-tttacgatgaagagatgatgctaattgttattttgttgctgcctcatag
 || || || |||||||| ||||||||||||||||| || ||||||   |||||||| |||||||| |||  ||| ||  |||| ||  |  || | |||||      | | ||     ||   || |   | | || |||   | |     | | |||||| ||  |  || ||  ||| |   |  ||| |   |   ||| |||| |      | | ||
TGCTAAGTCCATGAAGTTCAAGGATGGTTACATGATCTCATCTGGGAGCCCTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaagatgcttgatgtccgtcagta--gctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatg--tttacag

upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtt-attttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatag-----------------------
|||||| ||||||||||| |||||||| ||||||||||| || ||    || ||||| |||||||| ||   ||| || ||||| ||  |  |  ||||||||  |   ||  ||||||        | ||   |    | |  | ||  ||  || |       | ||  ||| | | ||| | ||   | |      |  | |||   ||  || |||                       
AGCCAAGTCTATGAAGTTCAAGGATGGCTACATGATTTCATCAGGAAGCCCCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgagcagctattcagtg-gtgtcctctctgtggtct--ccttgctgatttctcctacggtctttgttttcaa-gaaaaaatctcgtttgcaagttgtctgtaa-tgtatcttagaaatgtttcgttatttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611139|gb|DB983918.1|DB983918
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|15000177|gb|BI320991.1|BI320991
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|20498169|gb|BQ273099.1|BQ273099
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|58018699|gb|CX705441.1|CX705441
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|151394186|gb|EV264057.1|EV264057
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|21678027|gb|BQ630378.1|BQ630378
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTT
EST: gi|24205643|gb|BU964896.1|BU964896
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAA
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAA
EST: gi|14991787|gb|BI317460.1|BI317460
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192316858|gb|FK006085.1|FK006085
EST:     CAGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|17023989|gb|BM095023.1|BM095023
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|254316297|gb|GR827834.1|GR827834
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|58014813|gb|CX701555.1|CX701555
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|22541845|gb|BU091688.1|BU091688
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGG
EST: gi|298189761|gb|HO038164.1|HO038164
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192325123|gb|FK019069.1|FK019069
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|37996532|gb|CF808121.1|CF808121
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7041963|gb|AW471857.1|AW471857
EST:     CTGTCAAAGATTACATTGGCTCTGCAGGGAGACATGTGCTCCTGAGACAA                         GGTGTTTTTGGCATTAAAGTGAAGAT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGAT
EST: gi|192324902|gb|FK015383.1|FK015383
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209701755|gb|BW655896.1|BW655896
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|58024786|gb|CX711527.1|CX711527
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|31307494|gb|CD392697.1|CD392697
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7925503|gb|AW831529.1|AW831529
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTTGCATTATAG-TGAAGATCAT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTA-AGGTGAAGATCAT
EST: gi|26268284|gb|CA819347.1|CA819347
EST:     GTCAGAGATTTAC-TTGACTCTGCAGTGAGACATGGGCTCCCTAA-ACCG                         GGGGTTCTTGGGATTAAG
genomic: GTCAAAGATT-ACATTGACTCTGCAGTGAGACATGTGCTCC-TGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAG
EST: gi|57576092|gb|CX549063.1|CX549063
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192326793|gb|FK017360.1|FK017360
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTACTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAA-GGG
EST: gi|13790896|gb|BG653487.1|BG653487
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|9986821|gb|BE660929.1|BE660929
EST:     TGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAAG                         GGTGTTCTTGGCATTAANGTGAAGATCATGCCTTGAATGGGATCCTAAGG
genomic: TGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACA-Ggttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGC-TTGATTGGGATCCTAAGG
EST: gi|6094998|gb|AW119665.1|AW119665
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209701714|gb|BW655895.1|BW655895
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209721034|gb|BW666291.1|BW666291
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7924389|gb|AW830415.1|AW830415
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192316859|gb|FK006086.1|FK006086
EST:     CAGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|22524443|gb|BU083254.1|BU083254
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|18040077|gb|BM308371.1|BM308371
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATC
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATC
EST: gi|192303477|gb|FG994483.1|FG994483
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATT
EST: gi|4292317|gb|AI437745.1|AI437745
EST:     TGTCAAAGATTACATTGACTCTGCAGTGAGACATGTNGCTC-TGAGACAG                         GGTGT-CTTTGCATTA
genomic: TGTCAAAGATTACATTGACTCTGCAGTGAGACATGT-GCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTA
EST: gi|15664562|gb|BI701933.1|BI701933
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAANGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|31472070|gb|CD414098.1|CD414098
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|23727936|gb|BU762008.1|BU762008
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|254316296|gb|GR827833.1|GR827833
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192315548|gb|FK009700.1|FK009700
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCT
EST: gi|31306391|gb|CD391594.1|CD391594
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|9820315|gb|BE555825.1|BE555825
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTTCTGAGACAG                         G-TGTTCTTGGCATT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATT
EST: gi|192303478|gb|FG994484.1|FG994484
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192315549|gb|FK009701.1|FK009701
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209721033|gb|BW666290.1|BW666290
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAAATCTATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG