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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATATTCCCAACGATACTCTTCATTATCATCTCCATGgtaagatacatatctctgattaaataatttgaatagacaacaataattaattaatcacaaatttacaacacaagctatataacatatacactgacgcagg...

Basic information

species Glycine max
transcript GLYMA20G20300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 2
CATCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATATTCCCAACGATACTCTTCATTATCATCTCCATGgtaagatacatatc-tctgattaaataatttgaatagacaacaataattaattaatcacaaatttaca-acacaagctatataacatatacactgacgcagg
|  ||| ||||| |  | |||||||| || || || ||||| || || |||||||||||||| ||| | || ||| | ||||| |||||||||||||||||||  | |    || |||  |||||  ||     ||  |    |||| ||  ||| |   |||  |     |   ||                         
CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtaccaaatgcctcatcttcttaaaccataaacttatccttttataactacataaacttcaatgcatgtgtatgcgcag-----------------------

upper sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 2
CATCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATATTCCCAACGATACTCTTCATTATCATCTCCATGgtaagatacatatctctgattaaataatttgaatagacaacaa---taattaattaatcacaaatttacaacacaagctatataacatatacactgacgcagg--
|  ||| |||||||  | || |||||||||||||| |||||||| ||||| ||||| ||||| |   | || |||||||| |||||||| |||||||||||||||||  |||  | ||| |  | ||   |  || ||    |   | | || || | | |  ||  | ||  || || ||   |  ||| | || |   |    
CGGCATTTGGTTTCACTTGTGGGTTACTGTATATCTGAGCATCAAAGATTACTTGTCTATGATTTCGTACCAAACGATACCCTTCATTACCATCTCCATGgtaagat--atacttttgagtttacaaaaagggtaaaccttgaattttaatagttgaactcggatgcataat-catgcaatt--atgtatgctctcaaataaaat