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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTTTGTTGGGTCTAGTATATGCTGCAGTGACACCTGCTGTTCTTCCTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagatgttaaatttatatatgcacgtttacgattctggtgccattaatcattcattaaaaaatgcacacaacacagttaacaccataatggcttatacattaatccctattatacattagcaccgtagtggtttatacatgagatgaagaccctgtaccttctaattgttttccaaatgcag

Basic information

species Glycine max
transcript GLYMA20G16230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 9
GTACTTTTTGTTGGGTCTAGTATATGCTGCAGTGACACCTGCTGTTCTTCCTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagatgttaaatttatatatgcacgtttacgattctggtgccattaatcattcattaaaaaatgcacacaacacagttaacaccataatggcttatacattaatccctattatacattagcaccgtagtggtttatacatgagatgaagaccctgtaccttctaattgttttccaaatgcag
 || |||||  |||| || || |||||||  |||||||| |   | |||||||||||||  ||||||||| ||||||| ||| | || ||||| ||||||||| | || ||  |  || ||         | ||  ||  |      |      | |||  |   | |||||| ||||   | || |  ||      ||  |    |||                                                                              
ATATTTTTTACTGGGCCTTGTCTATGCTGTGGTGACACCAGTGCTACTTCCTTTCATAATTGTTTTCTTTTGCCTGGCATATGTCGTATTCCGCCATCAGgtaaaaagttgacattttgat---------tataaaatcttaaatataaagggtaatcaggattgagtgcaca-aacatcctcaaga--atgcctattttcaatccaatatt---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306870|gb|FK003040.1|FK003040
EST:     CTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAG                         ATCATTAACGTATATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagat ... ccaaatgcagATCATTAACGTATATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT
EST: gi|11412244|gb|BF424255.1|BF424255
EST:     CTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGCCATCAG                         ATCATTAACGTATATAATCAGGAGTATGAGAGTGGAGCATCATTCTGGCCT
genomic: CTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagat ... ccaaatgcagATCATTAACGTATATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT